Table 3.
Simple sequence repeats (SSRs) in the five Epimedium cp genomes.
| Species | SSR loci no. | PolyM. loci no. | PolyM. loci (%). | P1 loci no. | P2 loci no. | P3 loci no. | P4 loci no. | P5 loci no. | P6 loci no. | Location | Region | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGS | Intron | pCDS | pCDS-IGS | LSC | SSC | IR | ||||||||||
| E. acuminatum | 87 | 74 | 85.06 | 73 | 6 | / | 5 | 1 | 2 | 54 | 19 | 13 | 1 | 73 | 10 | 4 |
| E. dolichostemon | 80 | 67 | 83.75 | 68 | 6 | / | 5 | 1 | / | 50 | 18 | 12 | / | 67 | 9 | 4 |
| E. lishihchenii | 87 | 74 | 85.06 | 74 | 6 | 1 | 6 | / | / | 51 | 22 | 14 | / | 71 | 12 | 4 |
| E. pseudowushanense | 84 | 71 | 84.52 | 71 | 6 | / | 6 | 1 | / | 50 | 21 | 13 | / | 71 | 9 | 4 |
| E. koreanum | 85 | 72 | 84.71 | 72 | 7 | / | 5 | / | 1 | 49 | 23 | 13 | / | 70 | 11 | 4 |
| Total Loci | 116 | 103 | 88.79 | 96 | 7 | 1 | 8 | 1 | 3 | 72 | 27 | 16 | 1 | 97 | 13 | 6 |
P1 to P6 represented SSR loci with mono-, di-, tri-, tetra-, penta-, and hexanucleotide repeats, respectively.