Table 7.
Overview of the number of variable nucleotide and putative aminoacids positions in the alignment of 16S rDNA, ITS and the ten housekeeping genes of P. salmonis included
| Gene | N | No. Nucleotides | Variable positions | % | No. Amino acids | Variable positions | % |
|---|---|---|---|---|---|---|---|
| 16S | 18 | 1433 | 14 | 1,0 | - | - | - |
| ITS | 18 | 765 | 34 | 4,4 | - | - | - |
| dnaK | 18 | 1684 | 66 | 3,9 | 560 | 3 | 0,5 |
| groEL | 18 | 1454 | 73 | 5,0 | 484 | 10 | 2,1 |
| tbpB | 18 | 1879 | 95 | 5,1 | 626 | 26 | 4,2 |
| mltB | 18 | 843 | 20 | 2,4 | 280 | 5 | 1,8 |
| ospA | 18 | 364 | 14 | 3,8 | 121 | 3 | 2,5 |
| radA | 18 | 906 | 37 | 4,1 | 301 | 5 | 1,7 |
| airA | 18 | 407 | 21 | 5,2 | 135 | 6 | 4,4 |
| bax | 18 | 612 | 18 | 2,9 | 203 | 9 | 4,4 |
| tnpA | 18 | 356 | 20 | 5,6 | 118 | 5 | 4,2 |
| elfP | 18 | 473 | 26 | 5,5 | 157 | 0 | 0,0 |
| MLST | 216 | 11176 | 438 | 4,1 | 2985 | 7,2 | 2,6 |
Symbols: N: number of P. salmonis sequences