Table 1. System and characteristics of the accepted nomenclature for plant (algae + land plants) Phytoglobins (Phytogb).
Former plant globin
name and abbreviation (in parenthesis) |
New
nomenclature a |
Plant origin | Distinctive characteristics b |
---|---|---|---|
Nonsymbiotic hemoglobin
(nsHb) |
Phytogb0 | Algae
c+bryophytes+
gymnosperms |
Heme-Fe either penta- or hexacoordinate.
Moderate to high affinity for O 2. Localized in any plant organ. |
Class/type 1
nonsymbiotic hemoglobin (nsHb-1) |
Phytogb1 | Angiosperms | Heme-Fe predominantly hexacoordinated by a distal
amino acid. Extremely high affinity for O 2 mostly due to a very low O 2-dissociation rate constant ( k off). Localized in any plant organ. |
Class/type 2
nonsymbiotic hemoglobin (nsHb-2) |
Phytogb2 | Angiosperms | Heme-Fe predominantly pentacoordinated.
Moderate to high affinity for O 2. Localized in any plant organ. |
Symbiotic hemoglobin
(symHb) |
SymPhytogb | Non-legume N
2-fixing
plants d |
Heme-Fe predominantly pentacoordinated.
Moderate to high affinity for O 2. Specifically localized in N 2-fixing nodules of actinorhizal plants or any other non-legume land plant |
Leghemoglobin
(Lb) |
Lb | N 2-fixing legumes d | Heme-Fe predominantly pentacoordinate.
Moderate to high affinity for O 2. Specifically localized in legume N 2-fixing nodules. |
Class/type 3
nonsymbiotic hemoglobin/ Truncated hemoglobin (tHb) |
Phytogb3 | Algae c+land plants | Globin-domain amino acid sequence and structure
(i.e. folding into the 2/2-fold) similar to those of bacterial tHbs. Heme-Fe either penta- or hexacoordinate. Moderate to high affinity for O 2. Localized in any plant organ. |
aNumerical classification corresponds to that previously proposed by Hunt et al. 6. Proteins coded by multiple phytogb gene copy numbers within the same plant species should be indicated as the number of copy after the Phytogb numerical classification. For example, rice ( Oryza sativa) Phytogbs 1 and 2 (corresponding to the former nsHbs-1) should be indicated as rice Phytogb1.1 and Phytogb1.2, respectively (see text for a description on the species-specific Phytogbs acronym).
bHeme-Fe coordination and affinity for O 2 correspond to those from moss Phytogb0 7– 9, barley 10, rice 11 and Arabidopsis 12 Phytogb1, Arabidopsis Phytogb2 12, Casuarina SymPhytogb 13, soybean Lb 14, 15 and Arabidopsis Phytogb3 16 representative of Phytogb0, Phytogb1, Phytogb2, SymPhytogb, Lb and Phytogb3, respectively.
cAmino acid sequence of algal globins analyzed so far 17– 19 is similar to that of land plant Phytogb0 and Phytogb3, hence algal globins can be classified as Phytogb0 or Phytogb3, respectively.
dSome SymPhytogbs and Lbs (such as the Parasponia 20 and Casuarina 21 and Chamaecrista 22 globins, respectively) are intermediate between Phytogbs1 and Phytogbs2 and SymPhytogbs and Lbs 22, 23 because they exhibit amino acid sequence similarity to Phytogbs1 and Phytogbs2 ( Figure 1) and are localized in non-legume an legume nodules and apparently play a role in symbiotic N 2-fixation.