Table 1. X-Ray Data Collection, Phasing and Refinement Statistics.
Data collection | |
Wavelength (Å) | 0.9791 |
Space group | C2 |
Unit cell a, b, c (Å) | 106.04, 98.10, 154.72 |
β = 96.04° | |
Resolution (Å) | 30.0–2.70 (2.80–2.70) |
Total observations | 326520 (31587) |
Unique reflections | 43536 (4327) |
Redundancy | 7.5 (7.3) |
Rmerge (%)* | 9.7 (59.1) |
I/σ (I) | 14.8 (2.9) |
Phasing | |
No. of Se sites | 13 |
Figure of merit | 0.43 |
No. of autobuilt residues | 1231 (76%) |
Refinement | |
Resolution (Å) | 30.0–2.70 (2.76–2.70) |
No. of reflections (Working/Free) | 41334/3091 |
Rwork/Rfree (%)† | 18.9/22.5 (29.3/33.0) |
R.m.s.d. bond lengths (Å) | 0.010 |
R.m.s.d. bond angles (°) | 1.6 |
Ramachandran plot (%)‡ | |
Favored | 95.5 |
Allowed | 3.4 |
Outlier | 1.1 |
Average B-values (Å2)/ No. of atoms | |
Protein | 77.7/12071 |
UDP | 57.1/100 |
CMP-Neu5Ac | 59.3/164 |
ManNAc | 94.7/15 |
Water | 67.3/331 |
Values in parentheses are for the highest resolution shells.
* for all equivalent reflections.
†Rwork and Rfree were calculated as for 95% data used in the refinement and 5% data that were excluded.
‡Checked by using MolProbity34.