Table 2.
PIC value among sub-groups of SNPs used in Fig. 3 and their genes identified by BLAST
| SNP name | Chr. | Position | MSU locus | Cloned | PIC | ||
|---|---|---|---|---|---|---|---|
| Local varieties | Introduced varieties | Improved varieties | |||||
| seq-rs1556 | 3 | 10952279 | LOC_Os03g19480 | SDG718 | 0.1423 | 0.3201 | 0.3629 |
| seq-rs1557 | 3 | 10965826 | LOC_Os03g19510 | OsClpP5 | 0.2103 | 0.3750 | 0.3739 |
| seq-rs1558 | 3 | 10976468 | LOC_Os03g19520 | / | 0.1521 | 0.3142 | 0.3629 |
| seq-rs2740 | 6 | 3066751 | LOC_Os06g06540 | / | 0.3423 | 0.3716 | 0.3233 |
| seq-rs2741 | 6 | 3080670 | LOC_Os06g06560 | OsSSI | 0.2179 | 0.3632 | 0.3233 |
| seq-rs2750 | 6 | 3188215 | LOC_Os06g06770 | / | 0.3655 | 0.1788 | 0.2824 |
| seq-rs3198 | 7 | 4573557 | LOC_Os07g08840 | OsTRXh1 | 0.3250 | 0.2617 | 0.1948 |
| seq-rs3199 | 7 | 4606495 | LOC_Os07g08880 | / | 0.1544 | 0.0208 | 0.1462 |
| seq-rs3200 | 7 | 4664150 | LOC_Os07g08970 | / | 0.0000 | 0.1735 | 0.0213 |
| seq-rs3201 | 7 | 4708187 | LOC_Os07g09020 | / | 0.0000 | 0.0000 | 0.0000 |
| seq-rs3202 | 7 | 4710622 | LOC_Os07g09020 | / | 0.0593 | 0.1853 | 0.1462 |