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. 2016 Feb 24;39(3):266–279. doi: 10.14348/molcells.2016.2362

Table 2.

Gene ontology analyses of the significantly up-regulated genes in the HDF old cells treated with TPA for 8 h and 24 h, based on the DMSO control, obtained by RNA sequencing.

Term Count P-value
TPA 8 h vs. 0 h in old HDFs (up-regulation) GOTERM_BP_FAT GO:0042127∼regulation of cell proliferation 13 0.002404
GO:0008284∼positive regulation of cell proliferation 8 0.011902
GO:0051726∼regulation of cell cycle 6 0.048291
GO:0040007∼growth 5 0.02407
GO:0010628∼positive regulation of gene expression 8 0.058907
GO:0045893∼positive regulation of transcription, DNA-dependent 7 0.066019
GO:0031328∼positive regulation of cellular biosynthetic process 12 0.002474
GO:0043069∼negative regulation of programmed cell death 10 2.86E-04
GO:0006916∼anti-apoptosis 7 0.001457
GO:0006469∼negative regulation of protein kinase activity 7 1.31E-05
GO:0043407∼negative regulation of MAP kinase activity 5 6.07E-05
GO:0006954∼inflammatory response 8 0.003291
GO:0006955∼immune response 11 0.007953
GOTERM_MF_FAT GO:0005125∼cytokine activity 10 2.54E-04
GO:0008083∼growth factor activity 7 0.055948
GO:0004175∼endopeptidase activity 8 0.639307
GOTERM_CC_FAT GO:0005615∼extracellular space 17 1.17E-06
GO:0044421∼extracellular region part 19 5.18E-06
GO:0005576∼extracellular region 27 2.46E-05
KEGG_PATHWAY hsa04060:Cytokine-cytokine receptor interaction 9 2.51E-04
hsa04630:Jak-STAT signaling pathway 6 0.003358
TPA 24 h vs. 0 h in old HDFs (up-regulation) GOTERM_BP_FAT GO:0006874∼cellular calcium ion homeostasis 4 0.021492
GO:0008544∼epidermis development 4 0.021799
GO:0006875∼cellular metal ion homeostasis 4 0.025678
GO:0030005∼cellular di-, tri-valent inorganic cation homeostasis 4 0.037309
GOTERM_MF_FAT GO:0005125∼cytokine activity 4 0.028158
GO:0004857∼enzyme inhibitor activity 6 0.002098
GO:0030414∼peptidase inhibitor activity 5 0.001745
GOTERM_CC_FAT GO:0005576∼extracellular region 24 1.65E-07
KEGG_PATHWAY hsa04630:Jak-STAT signaling pathway 3 0.054783