Table 4. Proteins Common to both HES and HEx.

Rank	NAME	CODE	HES score	HES emPAI	HEx score	HEx emPAI	HES/HEx emPAI
1	VAL-2.1	isotig03106	5149	8.35	103	0.12	69.6
2	TTR-1 Transthyretin-related	isotig04612	2130	29.24	144	0.86	34.0
3	VAL-1.3	isotig06456	2668	1.97	47	0.06	32.8
4	VAL-7.5	isotig01526	3367	11.23	100	0.35	32.1
5	VAL-1.1	isotig06320	6546	4.05	77	0.18	22.5
6	NAS-3.1 Astacin protease	isotig01799	832	2.02	47	0.12	16.8
7	VAL-3.1	isotig05790	4754	3.66	349	0.25	14.6
8	VAL-7.1	isotig01524	2593	8.84	129	0.64	13.8
9	NSN-1 Novel secreted protein, No SP	isotig18405	777	4.03	40	0.31	13.0
10	Astacin protease family member	isotig01791	419	1.41	67	0.12	11.8
11	CSP-4 Conserved secreted protein with SP	isotig13290	482	1.82	37	0.16	11.4
12	VAL-4	isotig10387	1770	4.08	53	0.42	9.7
13	Aspartyl protease (necepsin)	isotig06497	884	1.17	136	0.18	6.5
14	Kunitz inhibitor	isotig01217	273	0.76	88	0.12	6.3
15	VAL-12	isotig06637	803	1.02	130	0.19	5.4
16	Astacin protease family member (fragment)	isotig01219	956	3.05	89	0.59	5.2
17	Superoxide dismutase	isotig09104	235	0.47	48	0.10	4.7
18	C-type lectin mannose receptor-like	isotig00496	366	0.97	61	0.23	4.2
19	MFH-1 Ascaris MFP2b homologue	isotig07283	845	1.17	137	0.29	4.0
20	Cystatin	isotig02700	261	0.41	71	0.12	3.4
21	CSP-2 Conserved secreted protein with SP	isotig09016	502	0.57	434	0.20	2.9
22	Motile sperm domain containing protein	isotig16097	175	0.50	144	0.22	2.3
23	Galectin	isotig09082	120	0.20	44	0.09	2.2
24	TIL domain-containing protein	isotig00779	98	0.27	42	0.13	2.1
25	Arginine kinase	isotig05009	212	0.65	193	0.33	2.0
26	Motile sperm domain containing protein	isotig16375	220	0.89	160	0.53	1.7
27	ERM family member	isotig02815	79	0.08	100	0.05	1.6
28	Cyclophilin	isotig09088	111	0.31	71	0.20	1.6
29	Actin depolymerising factor	isotig07522	145	0.23	144	0.15	1.5
30	Macrophage migration inhibitory factor	isotig14093	256	0.96	383	0.65	1.5
31	TTR-5 Transthyretin-like	isotig13207	397	0.89	88	0.61	1.5
32	MFH-3 Ascaris MFP2b homologue	isotig07980	463	0.84	148	0.58	1.4
33	TTR-10 Transthyretin-like	isotig11792	108	0.67	84	0.47	1.4
34	NSP Novel isotig12701	isotig12701	194	0.99	166	0.73	1.4
35	Chondroitin family member	isotig01493	710	0.48	571	0.38	1.3
36	Ferritin	isotig15727	117	0.74	140	0.73	1.0
37	NSP-39 Novel secreted protein with SP	isotig16333	108	0.78	187	0.77	1.0
38	Vitellogenin	contig00207	1552	5.73	1301	5.70	1.0
39	Myoglobin (fragment)	isotig19571	415	3.10	521	3.09	1.0
40	Calmodulin	isotig07710	53	0.07	57	0.07	1.0
41	Cathepsin-B like cysteine protease	isotig07017	147	0.06	136	0.06	1.0
42	Galectin	isotig09713	81	0.10	69	0.10	1.0
43	Kunitz inhibitor	isotig02721	82	0.13	82	0.13	1.0
44	Kunitz inhibitor	isotig02378	35	0.20	36	0.20	1.0
45	ML-domain containing protein	isotig10098	110	0.23	88	0.23	1.0
46	Motile sperm domain containing protein	isotig16212	138	0.22	92	0.22	1.0
47	NSP-59 Novel secreted protein with SP	isotig13319	38	0.16	35	0.16	1.0
48	Triose phosphate isomerase	isotig05016	276	0.44	198	0.44	1.0
49	VAL-15	isotig02149	133	0.20	200	0.20	1.0
50	Chondroitin family member	isotig08745	82	0.21	92	0.22	1.0
51	NPA-1 Nematode polyprotein allergen	isotig02438	1498	0.67	1562	0.75	0.9
52	Vitellogenin	contig00471	3997	3.05	3369	3.74	0.8
53	Nucleoside diphosphate kinase	isotig05236	462	1.18	401	1.55	0.8
54	TTR-6 Transthyretin related	isotig05212	304	0.62	210	0.83	0.7
55	Rab GDP dissociation inhibitor	isotig06129	54	0.16	168	0.22	0.7
56	Chondroitin family member	isotig06559	284	0.48	433	0.66	0.7
57	Vitellogenin	contig00199	696	2.38	884	3.29	0.7
58	Myoglobin	isotig11742	1446	3.31	3366	4.60	0.7
59	Enolase	isotig06965	826	2.13	1476	3.02	0.7
60	Transaldolase	isotig07176	59	0.14	62	0.21	0.7
61	Vitellogenin	contig00203	1205	4.87	1040	7.34	0.7
62	Aldolase	isotig04899	67	0.13	114	0.20	0.7
63	Vitellogenin (fragment)	sing00711	131	1.60	179	2.57	0.6
64	Myoglobin	isotig05169	1094	1.64	1977	2.64	0.6
65	Myoglobin	isotig04274	1579	3.13	2208	5.07	0.6
66	TTR-11 Transthyretin related	isotig04258	83	0.29	95	0.47	0.6
67	Ribosomal protein 60S L40 / Ubiquitinn	isotig13199	108	0.34	116	0.56	0.6
68	Serpin	isotig02225	281	0.33	788	0.59	0.6
69	Vitellogenin	contig00212	918	2.24	1295	4.24	0.5
70	Vitellogenin	contig00211	263	1.29	374	2.46	0.5
71	Chondroitin family member	isotig04525	51	0.13	75	0.27	0.5
72	Fatty acid/retinol binding protein	isotig11475	577	1.47	515	3.12	0.5
73	Fatty acid/retinol binding protein (fragment)	sing12372	71	0.27	78	0.61	0.4
74	Phosphatidylethanolamine-binding protein	isotig05126	339	0.64	469	1.67	0.4
75	Independent phosphoglycerate mutase	isotig01699	48	0.05	136	0.14	0.4
76	Vitellogenin	Hp_ADY_001G11	144	2.05	523	5.75	0.4
77	Cyclophilin	isotig11124	256	0.87	364	2.48	0.4
78	Thioredoxin peroxidase	isotig05188	498	1.79	771	5.19	0.3
79	Enolase (fragment)	isotig18996	326	1.08	404	3.30	0.3
80	Glutathione S-transferase	isotig11588	219	0.47	322	1.45	0.3
81	HSP70 (fragment)	isotig13132	148	0.35	345	1.11	0.3
82	Myoglobin	isotig11356	398	0.63	2113	2.00	0.3
83	Calreticulin	Hpb-CRT	74	0.21	636	0.67	0.3
84	Lipocalin domain-containing protein	isotig05316	104	0.34	229	1.09	0.3
85	Myoglobin	isotig11666	683	4.48	1607	14.53	0.3
86	CSN-5 Conserved secreted protein, No SP	isotig03664	43	0.08	393	0.27	0.3
87	Aldolase	isotig04915	627	0.77	1611	3.00	0.3
88	Major sperm protein	isotig01565	1278	2.10	1820	8.59	0.2
89	HSP60	isotig06093	195	0.43	958	1.76	0.2
90	Piwi domain-containing protein	isotig04875	77	0.06	167	0.25	0.2
91	14-3-3 family member	isotig07975	324	0.94	1218	3.98	0.2
92	CSN-2 Conserved secreted protein, No SP	isotig04423	127	1.08	449	4.75	0.2
93	Actin	isotig08340	102	0.27	695	1.38	0.2
94	Cytochrome C	isotig11144	50	0.13	361	0.86	0.2
95	Actin	isotig01640	340	0.47	2251	3.21	0.1
96	Eukaryotic translation elongation factor 2	isotig05363	86	0.09	1015	0.87	0.1
97	Protein disulfide isomerase	isotig01916	81	0.16	902	1.62	0.1
98	Eukaryotic translation elongation factor 1A	isotig02523	44	0.12	1187	1.64	0.1
99	Protein disulfide isomerase	isotig05787	133	0.24	1465	3.42	0.1
100	HSP70	isotig07134	100	0.22	1167	3.18	0.1
101	Glutathione S-transferase	isotig10292	47	0.24	389	3.88	0.1
102	Malate dehydrogenase	isotig05076	44	0.07	561	1.31	0.1
103	Ribosomal protein 60S P0	isotig01358	38	0.04	965	0.77	0.1
104	Retinol binding protein	Hpb-RBP	29	0.16	419	5.15	0.0