FIG 3.

ATSV intergenic repeat locus. (A) Schematic of the locus. Purple triangles, repeat 1 (TGCACAXXAGCAA consensus); orange triangles, repeat 2 (TCAATAA consensus). Repeats 1 and 2 are each followed by 9 unconserved nucleotides. Gray arrows indicate surrounding ORFs. (B) MUSCLE (73) alignment of interspersed repeat loci. (C) Schematic of the 645-bp putative origin of viral replication. Red triangles, inverted repeats; purple and gray arrows, surrounding ORFs. (D) Sequences of the 5 perfect inverted repeats. Genome positions are indicated on the left.