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. 2016 Mar 17;6:23212. doi: 10.1038/srep23212

Table 1. Pathway annotation to KEGG of pre-squaring stage-specific DEG in G.barbadense.

  Pathway Gene number(2243) Pvalue Qvalue Pathway ID
1 Photosynthesis-antenna proteins 27 (1.2%) 3.36E-20 9.69E-18 ko00196
2 Metabolic pathways 768 (34.24%) 7.32E-11 1.05E-08 ko01100
3 DNA replication 49 (2.18%) 4.77E-10 4.58E-08 ko03030
4 Amino sugar and nucleotide sugar metabolism 77 (3.43%) 1.83E-08 1.32E-06 ko00520
5 Starch and sucrose metabolism 117 (5.22%) 4.13E-08 2.38E-06 ko00500
6 Biosynthesis of secondary metabolites 413 (18.41%) 2.61E-07 1.25E-05 ko01110
7 Plant hormone signal transduction 224 (9.99%) 1.56E-06 6.40E-05 ko04075
8 Plant-pathogen interaction 256 (11.41%) 5.72E-06 2.06E-04 ko04626
9 Fructose and mannose metabolism 119 (5.31%) 7.83E-05 2.51E-03 ko00051
10 Alanine, aspartate and glutamate metabolism 43 (1.92%) 0.000155339 4.47E-03 ko00250
11 Tyrosine metabolism 110 (4.9%) 0.000375324 9.83E-03 ko00350
12 Cyanoamino acid metabolism 32 (1.43%) 0.000818251 1.96E-02 ko00460
13 Other glycan degradation 35 (1.56%) 0.001132179 2.19E-02 ko00511
14 Apoptosis 81 (3.61%) 0.001144075 2.19E-02 ko04210
15 Chloroalkane and chloroalkene degradation 25 (1.11%) 0.001226188 2.19E-02 ko00625
16 Cysteine and methionine metabolism 35 (1.56%) 0.001249362 2.19E-02 ko00270
17 Mismatch repair 29 (1.29%) 0.001290759 2.19E-02 ko03430
18 Carotenoid biosynthesis 35 (1.56%) 0.001746863 2.79E-02 ko00906
19 Pentose phosphate pathway 35 (1.56%) 0.002632152 3.08E-02 ko00030
20 NF-kappa B signaling pathway 78 (3.48%) 0.002674192 3.08E-02 ko04064
21 Drug metabolism-cytochrome P450 22 (0.98%) 0.002785508 3.08E-02 ko00982
22 Chlorocyclohexane and chlorobenzene degradation 8 (0.36%) 0.002830841 3.08E-02 ko00361
23 Toll-like receptor signaling pathway 82 (3.66%) 0.002855844 3.08E-02 ko04620
24 Atrazine degradation 5 (0.22%) 0.002867008 3.08E-02 ko00791
25 Neurotrophin signaling pathway 89 (3.97%) 0.002874946 3.08E-02 ko04722
26 Lipopolysaccharide biosynthesis 11 (0.49%) 0.002949529 3.08E-02 ko00540
27 Microbial metabolism in diverse environments 225 (10.03%) 0.003075122 3.08E-02 ko01120
28 Pertussis 84 (3.74%) 0.00308791 3.08E-02 ko05133
29 Glutathione metabolism 33 (1.47%) 0.003273129 3.08E-02 ko00480
30 Neuroactive ligand-receptor interaction 2 (0.09%) 0.003312447 3.08E-02 ko04080
31 Leishmaniasis 81 (3.61%) 0.003312899 3.08E-02 ko05140
32 Pyrimidine metabolism 166 (7.4%) 0.004005977 3.61E-02 ko00240
33 Photosynthesis 29 (1.29%) 0.004622528 4.03E-02 ko00195
34 Chagas disease (American trypanosomiasis) 83 (3.7%) 0.005105472 4.32E-02 ko05142
35 Nitrogen metabolism 26 (1.16%) 0.005286608 4.35E-02 ko00910
36 D-Alanine metabolism 3 (0.13%) 0.005595 4.38E-02 ko00473
37 Benzoate degradation 87 (3.88%) 0.005774368 4.38E-02 ko00362
38 Insulin signaling pathway 46 (2.05%) 0.005838026 4.38E-02 ko04910
39 Ascorbate and aldarate metabolism 30 (1.34%) 0.005933246 4.38E-02 ko00053
40 Metabolism of xenobiotics by cytochrome P450 21 (0.94%) 0.00619936 4.46E-02 ko00980
41 Measles 82 (3.66%) 0.006586086 4.58E-02 ko05162
42 Tuberculosis 98 (4.37%) 0.006679158 4.58E-02 ko05152