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. 2016 Mar 17;6:23212. doi: 10.1038/srep23212

Table 3. The Mapman function annotation of DEG at square initiating stage both in G. hirsutum and G.barbadense.

Gene id BinName Description (homology gene in Arabidopsis)
CotAD_58304 PS.lightreaction.other electron carrier (ox/red).ferredoxin (at1g02180) ferredoxin-related
CotAD_35943 major CHO metabolism.degradation.starch.starch cleavage.beta amylase (at4g15210) ATBETA-AMY
CotAD_16567 minor CHO metabolism.trehalose.potential TPS/TPP (at4g17770) TPS5
CotAD_00103 glycolysis.cytosolic branch.non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NPGAP-DH) (at2g24270)aldehyde dehydrogenase 11A3 (ALDH11A3)
CotAD_10000 fermentation.ADH (at1g77120) alcohol dehydrogenase 1 (ADH1)
CotAD_07955 TCA/org transformation.carbonic anhydrases (at3g01500) carbonic anhydrase 1 (CA1)
CotAD_48130 mitochondrial electron transport/ATP synthesis.alternative oxidase (at5g64210)alternative oxidase 2 (AOX2)
CotAD_71865 cell wall.modification (at4g38210) expansin A20 (EXPA20)
CotAD_72788 cell wall.modification (at4g17030) expansin-like B1 (EXLB1)
CotAD_27981 cell wall.modification (at3g29030) expansin A5 (EXPA5)
CotAD_16307 cell wall.pectin*esterases.PME (at1g02810) Plant invertase/pectin methylesterase inhibitor superfamily
CotAD_12986 metal handling (at5g27690) Heavy metal transport/detoxification superfamily protein
CotAD_07016 secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase (at4g38460) geranylgeranyl reductase (GGR)
CotAD_24175 secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H (at5g07990) TRANSPARENT TESTA 7 (TT7)
CotAD_56508 secondary metabolism.sulfur-containing.glucosinolates (at4g03070) AOP1
CotAD_44293 secondary metabolism.sulfur-containing.glucosinolates.synthesis.aliphatic.sulfotransferase (at1g74090) desulfo-glucosinolate sulfotransferase 18 (SOT18)
CotAD_44293 secondary metabolism.sulfur-containing.glucosinolates.synthesis.indole.indole-3-methyl-desulfoglucosinolate sulfotransferase (at1g74090) desulfo-glucosinolate sulfotransferase 18 (SOT18)
CotAD_15307 secondary metabolism.flavonoids.dihydroflavonols (at5g24530) DOWNY MILDEW RESISTANT 6 (DMR6)
CotAD_24175 secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3”-monooxygenase (at5g07990)TRANSPARENT TESTA 7 (TT7)
CotAD_49345 hormone metabolism.abscisic acid.induced-regulated-responsive-activated (at5g59220) highly ABA-induced PP2C gene 1 (HAI1)
CotAD_56508 hormone metabolism.gibberelin.synthesis-degradation (at4g03070) AOP1
CotAD_12787 tetrapyrrole synthesis.unspecified (at1g17100) SOUL heme-binding family protein
CotAD_40314 stress.biotic (at3g12500) basic chitinase (HCHIB)
CotAD_73916 stress.biotic.PR-proteins (at1g61180) LRR and NB-ARC domains-containing disease resistance protein
CotAD_52530 stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor (at1g17860) Kunitz family trypsin and protease inhibitor protein
CotAD_22468 stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor (at1g17860) Kunitz family trypsin and protease inhibitor protein
CotAD_41277 stress.abiotic.drought/salt (at1g30360) early-responsive to dehydration 4 (ERD4)
CotAD_68015 stress.abiotic.unspecified (at5g66590) CAP superfamily protein
CotAD_24175 misc.cytochrome P450 (at5g07990)TRANSPARENT TESTA 7 (TT7)
CotAD_65900 misc.short chain dehydrogenase/reductase (SDR) (at4g11410) NAD(P)-binding Rossmann-fold superfamily protein
CotAD_44293 misc.sulfotransferase (at1g74090)desulfo-glucosinolate sulfotransferase 18 (SOT18)
CotAD_09729 misc.GDSL-motif lipase (at5g40990) GDSL lipase 1 (GLIP1)
CotAD_26978 misc.GDSL-motif lipase (at5g40990) GDSL lipase 1 (GLIP1)
CotAD_22031 RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family (at1g13260) related to ABI3/VP1 1 (RAV1)
CotAD_21647 RNA.regulation of transcription.CCAAT box binding factor family, HAP5 (at5g43250) “nuclear factor Y, subunit C13” (NF-YC13)
CotAD_47245 RNA.regulation of transcription.MADS box transcription factor family (at2g22540) SHORT VEGETATIVE PHASE (SVP)
CotAD_32839 RNA.regulation of transcription.MYB-related transcription factor family (at1g01060) LATE ELONGATED HYPOCOTYL (LHY)
CotAD_30985 RNA.regulation of transcription.MYB-related transcription factor family (at1g18330) EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1)
CotAD_02759 RNA.regulation of transcription.TCP transcription factor family (at3g18550) BRANCHED 1 (BRC1)
CotAD_00235 RNA.regulation of transcription.Aux/IAA family (at1g51950) indole-3-acetic acid inducible 18 (IAA18)
CotAD_14148 RNA.regulation of transcription.Psudo ARR transcription factor family (at5g24470) pseudo-response regulator 5 (PRR5)
CotAD_54816 RNA.regulation of transcription.putative transcription regulator (at1g04020)breast cancer associated RING 1 (BARD1)
CotAD_04662 RNA.regulation of transcription.putative transcription regulator (at2g29570)proliferating cell nuclear antigen 2 (PCNA2)
CotAD_55265 RNA.regulation of transcription.SET-domain transcriptional regulator family (at5g24330)ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (ATXR6)
CotAD_00066 RNA.regulation of transcription.unclassified (at5g10770) Eukaryotic aspartyl protease family protein
CotAD_65745 DNA.synthesis/chromatin structure (at1g26840) origin recognition complex protein 6 (ORC6)
CotAD_49345 protein.postranslational modification (at5g59220) highly ABA-induced PP2C gene 1 (HAI1)
CotAD_00063 protein.degradation.aspartate protease (at5g10770) Eukaryotic aspartyl protease family protein
CotAD_64010 protein.degradation.ubiquitin.E3.RING (at4g01270) RING/U-box superfamily protein
CotAD_72041 signalling.receptor kinases.leucine rich repeat VIII.VIII-2 (at1g56130) Leucine-rich repeat transmembrane protein kinase
CotAD_58997 signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase (at1g71010) FORMS APLOID AND BINUCLEATE CELLS 1C (FAB1C)
CotAD_25160 signalling.MAP kinases (at3g51630) with no lysine (K) kinase 5 (WNK5)
CotAD_06239 development.unspecified (at3g59550)SYN3
CotAD_07322 development.unspecified (at3g59550) SYN3
CotAD_42150 development.unspecified (at4g19450) Major facilitator superfamily protein
CotAD_50063 development.unspecified (at1g69490) NAC-like, activated by AP3/PI (NAP)
CotAD_07846 transport.amino acids (at5g40780) LHT1 (lysine histidine transporter)
CotAD_40809 transport.unspecified cations (at5g64560)magnesium transporter 9 (MGT9)
CotAD_61138 transport.misc (at5g52450) MATE efflux family protein
CotAD_54187 not assigned.no ontology.hydroxyproline rich proteins (at4g01050)thylakoid rhodanese-like (TROL)
CotAD_43563 not assigned.unknown no original description
CotAD_18636 not assigned.unknown (at5g40460) unknown protein
CotAD_17275 not assigned.unknown (at3g48490) unknown protein
CotAD_29961 not assigned.unknown (at5g05250) unknown protein
CotAD_23730 not assigned.unknown (at5g56850) unknown protein
CotAD_26649 not assigned.unknown (at2g38640)unknown function (DUF567)
CotAD_34939 not assigned.unknown (at3g01680)unknown protein
CotAD_46956 not assigned.unknown (gnl|cdd|36433) no description available
CotAD_56138 not assigned.unknown (at3g56870) unknown protein
CotAD_48331 not assigned.unknown (gnl|cdd|36433) no description available
CotAD_20876 not assigned.unknown (at4g28310) unknown protein
CotAD_22049 not assigned.unknown (at3g18440) aluminum-activated malate transporter 9 (ALMT9)
CotAD_74231 not assigned.unknown (at4g28310) unknown protein
CotAD_40867 not assigned.unknown (at5g21940) unknown protein