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. 2016 Mar 17;6:23212. doi: 10.1038/srep23212

Table 4. Identified targets for known miRNAs in cotton.

  miR-name log2Ratio TargetID log2Ratio type Target annotation
Gb1np/Gb1WT miR9484 18.30964 CotAD_21580 −1.13888 up-down unkown
      CotAD_34848 −2.5911 up-down LRR family protein
  miR9674a-3p −19.9987 CotAD_56347 1.333495 down-up EMBRYO DEFECTIVE 976 (EMB976)
Gb2np/Gb2WT miR5291a −16.6434 CotAD_63772 1.518275 down-up Glycosyl hydrolase family protein
  miR5537 19.1318 CotAD_07870 −1.05164 up-down chloride channel A (CLC-A)
      CotAD_32730 −1.01925 up-down Tetratricopeptide repeat (TPR)-like superfamily protein
      CotAD_72047 −1.34026 up-down HXXXD-type acyl-transferase family protein
      CotAD_73186 −2.15217 up-down HXXXD-type acyl-transferase family protein
  miR5641 −18.4987 CotAD_30697 3.752667 down-up glycosyl hydrolase 9B18 (GH9B18)
      CotAD_35367 2.500502 down-up SEPALLATA3 (SEP3)
  miR4393b −19.5048 CotAD_41814 1.089024 down-up cellulose-synthase like D2 (CSLD2)
  miR1077-5p 22.57754 CotAD_07688 −1.3105 up-down unkown
      CotAD_35213 −1.28959 up-down unkown
      CotAD_47342 −1.17882 up-down unkown
      CotAD_48531 −1.29591 up-down RRNA intron-encoded homing endonuclease
      CotAD_53140 −1.34414 up-down unkown
      CotAD_70473 −1.13899 up-down unkown
  miR156i-3p 17.38975 CotAD_31099 −2.04149 up-down unkown
      CotAD_54581 −2.46349 up-down galacturonosyltransferase 12 (GAUT12)
  miR166i 21.68899 CotAD_39504 −2.67928 up-down unkown
      CotAD_75643 −1.8728 up-down homeobox gene 8 (HB-8)
  miR9484 21.06244 CotAD_01114 −1.16244 up-down NB-ARC domain-containing disease resistance protein
      CotAD_16057 −1.32682 up-down unkown
      CotAD_21416 −1.28186 up-down Late embryogenesis abundant protein, LEA-5
      CotAD_25778 −1.15489 up-down pleiotropic drug resistance 5 (PDR5)
      CotAD_26434 −1.74762 up-down nitrate transporter 1:2 (NRT1:2)
      CotAD_34848 −2.29922 up-down LRR family protein
      CotAD_40632 −1.10811 up-down allantoate amidohydrolase (AAH)
      CotAD_44160 −1.96883 up-down receptor like protein 35 (RLP35)
      CotAD_47999 −1.29278 up-down pleiotropic drug resistance 5 (PDR5)
      CotAD_68929 −2.75838 up-down unkown
  miR862-3p −16.5445 CotAD_40927 1.124491 down-up unkown
  miR482d 17.53683 CotAD_34619 −5.55857 up-down RECOGNITION OF PERONOSPORA PARASITICA 8 (RPP8)
  miR5298d −16.4595 CotAD_45973 2.497785 down-up unkown
      CotAD_67595 4.281629 down-up Cysteine/Histidine-rich C1 domain family protein
Gb3np/Gb3WT miR7502 −4.33643 CotAD_35035 1.416654 down-up FRAGILE FIBER 1 (FRA1)
  miR482b 19.36951 CotAD_59175 −1.5279 up-down NB-ARC domain-containing disease resistance protein
  miR167a-5p 25.12849 CotAD_21735 −1.82028 up-down GDSL-like Lipase/Acylhydrolase superfamily protein
      CotAD_24173 −2.20715 up-down Flavonoid 3′-monooxygenase
  miR829-5p −17.6664 CotAD_20201 3.869985 down-up Disease resistance protein (TIR-NBS-LRR class) family
  miR5641 −18.9006 CotAD_30080 1.385631 down-up SABRE (SAB)
      CotAD_37128 1.089237 down-up unkown
      CotAD_38231 1.789472 down-up PARVUS (PARVUS)
      CotAD_65515 1.039363 down-up P-loop containing nucleoside triphosphate hydrolases superfamily protein
  miR1159.1 21.12174 CotAD_28336 −14.1677 up-down unkown
  miR157a-5p −3.41905 CotAD_19197 5.586874 down-up O-methyltransferase family protein
Gh1np/Gh1WT miR9484 −18.1864 CotAD_52129 1.875941 down-up probable E3 ubiquitin-protein ligase LOG2-like
Gh3np/Gh3WT miR5537 18.61224 CotAD_28668 −3.57269 up-down wall associated kinase-like 1 (WAKL1)
  miR6103-3p −20.0962 CotAD_05723 1.008805 down-up cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (CRK25)
      CotAD_15382 1.28365 down-up guanylyl cyclase 1 (GC1)
      CotAD_57423 3.435504 down-up cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (CRK26)
      CotAD_57424 1.427739 down-up cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (CRK10)
      CotAD_75962 1.142944 down-up phragmoplast orienting kinesin 2 (POK2)
  miR2950 −3.81938 CotAD_23640 1.161408 down-up hydroxyproline-rich glycoprotein family protei
  miR5021 −17.16 CotAD_02433 2.113803 down-up MYB
      CotAD_05722 1.87195 down-up cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (CRK25)
      CotAD_08430 1.194253 down-up Vacuolar import/degradation, Vid27-related protein
      CotAD_08496 1.074783 down-up DREB1C
      CotAD_13093 1.070816 down-up lectin protein kinase family protein
      CotAD_13340 1.687647 down-up AAA-ATPase 1 (AATP1)
      CotAD_19878 1.284197 down-up senescence-related gene 3 (SRG3)
      CotAD_28123 1.288063 down-up early nodulin-like protein 1 (ENODL1)
      CotAD_31169 2.538615 down-up sucrose-proton symporter 2 (SUC2)
      CotAD_35030 1.129006 down-up WRKY transcription factor 26
      CotAD_38978 2.753387 down-up dehydrin 2
      CotAD_68811 2.057678 down-up plastid developmental protein DAG
      CotAD_72901 1.577081 down-up FERONIA (FER)
  miR156a-5p −20.6349 CotAD_28172 1.611284 down-up PAS domain-containing protein tyrosine kinase family protein
  miR414 −18.2483 CotAD_05693 2.220604 down-up unkown
      CotAD_08496 1.074783 down-up DREB1C
      CotAD_20312 1.280126 down-up plant intracellular ras group-related LRR 2
      CotAD_35408 1.248969 down-up global transcription factor group E4 (GTE4)
      CotAD_39897 4.054389 down-up ABA REPRESSOR1 (ABR1)
      CotAD_40639 2.371314 down-up Calcium-binding EF-hand family protein
      CotAD_41567 1.228057 down-up NBS-LRR resistance protein RGH2
      CotAD_42550 1.495769 down-up unkown
      CotAD_53959 3.793863 down-up CYCLIN D1;1 (CYCD1;1)
      CotAD_57315 4.286361 down-up unkown
      CotAD_62266 2.179486 down-up receptor like protein 13 (RLP13)
      CotAD_63349 4.788476 down-up formin homology5 (Fh5)