Table 1. Information about the 43-SNP-based molecular barcode and diversity among panel 1 accessions.
SNP barcode | SNP ida | Chr | Position | SNP type | Type_of_ change_I | Type_of_ change_IIb | 429 accessionsc | |
---|---|---|---|---|---|---|---|---|
PIC | MAF | |||||||
WB01_1A | IWA530 | 1A | 107.3 | T/C | Transition | Synonymous | 0.35 | 0.34 |
WB02_1A | IWA2783 | 1A | 124.5 | A/C | Transversion | Nonsynonymous | 0.35 | 0.35 |
WB03_1A | IWA5405 | 1A | 181.9 | T/C | Transition | Synonymous | 0.37 | 0.44 |
WB04_1B | IWA5186 | 1B | 91.9 | A/G | Transition | Synonymous | 0.37 | 0.47 |
WB05_1B | IWA4153 | 1B | 95.7 | T/C | Transition | Nonsynonymous | 0.3 | 0.25 |
WB06_1B | IWA4154 | 1B | 95.8 | T/C | Transition | Nonsynonymous | 0.3 | 0.25 |
WB07_1B | IWA4155 | 1B | 96.4 | T/C | Transition | Synonymous | 0.3 | 0.25 |
WB08_1B | IWA4031 | 1B | 102.7 | A/G | Transition | Nonsynonymous | 0.37 | 0.43 |
WB09_1B | IWA695 | 1B | 111.2 | T/C | Transition | - | 0.37 | 0.48 |
WB10_1B | IWA4525 | 1B | 133.4 | A/G | Transition | - | 0.37 | 0.48 |
WB11_1D | IWA4884 | 1D | 95.7 | T/C | Transition | Synonymous | 0.22 | 0.15 |
WB12_2A | IWA2938 | 2A | 189.8 | A/C | Transversion | Nonsynonymous | 0.37 | 0.49 |
WB13_2B | IWA2442 | 2B | 47.4 | A/C | Transversion | Nonsynonymous | 0.36 | 0.39 |
WB14_2B | IWA4323 | 2B | 110.8 | T/G | Transversion | Synonymous | 0.26 | 0.19 |
WB15_2D | IWA2961 | 2D | 117.7 | A/G | Transition | Synonymous | 0.36 | 0.39 |
WB16_3A | IWA5285 | 3A | 108.5 | T/C | Transition | Synonymous | 0.37 | 0.5 |
WB17_3B | IWA5106 | 3B | 13.8 | A/G | Transition | Synonymous | 0.36 | 0.39 |
WB18_3B | IWA2037 | 3B | 33.2 | T/C | Transition | - | 0.26 | 0.19 |
WB19_3B | IWA8303 | 3B | 37.2 | A/G | Transition | Synonymous | 0.34 | 0.31 |
WB20_3B | IWA662 | 3B | 52.8 | T/C | Transition | - | 0.37 | 0.47 |
WB21_3B | IWA5618 | 3B | 52.8 | T/C | Transition | Synonymous | 0.37 | 0.45 |
WB22_3B | IWA6279 | 3B | 73.8 | A/G | Transition | Synonymous | 0.14 | 0.08 |
WB23_3B | IWA3710 | 3B | 88.3 | A/G | Transition | - | 0.37 | 0.41 |
WB24_3B | IWA2124 | 3B | 102 | A/G | Transition | - | 0.37 | 0.43 |
WB25_3B | IWA3835 | 3B | 102.6 | T/G | Transversion | Nonsynonymous | 0.37 | 0.41 |
WB26_3D3 | IWA3011 | 3D3 | 17.7 | T/C | Transition | - | 0.35 | 0.34 |
WB27_4A | IWA1691 | 4A | 108.4 | A/G | Transition | Nonsynonymous | 0.36 | 0.37 |
WB28_4B | IWA4854 | 4B | 41.4 | A/C | Transversion | Synonymous | 0.34 | 0.31 |
WB29_4D | IWA5375 | 4D | 26.9 | T/G | Transversion | Nonsynonymous | 0.35 | 0.36 |
WB30_5A | IWA4805 | 5A | 60.5 | T/G | Transversion | Synonymous | 0.35 | 0.34 |
WB31_5A | IWA5326 | 5A | 123.1 | A/G | Transition | Nonsynonymous | 0.2 | 0.13 |
WB32_5B | IWA1755 | 5B | 96.5 | A/G | Transition | Nonsynonymous | 0.37 | 0.49 |
WB33_5B | IWA2698 | 5B | 111.6 | T/C | Transition | Nonsynonymous | 0.37 | 0.46 |
WB34_5B | IWA6526 | 5B | 158.6 | A/G | Transition | Synonymous | 0.37 | 0.44 |
WB35_5D3 | IWA7177 | 5D3cult | 18 | T/C | Transition | - | 0.37 | 0.5 |
WB36_6A | IWA224 | 6A | 114.5 | T/C | Transition | - | 0.37 | 0.48 |
WB37_6B | IWA8380 | 6B | 37.2 | A/G | Transition | Synonymous | 0.37 | 0.43 |
WB38_6B | IWA3312 | 6B | 73.7 | T/C | Transition | - | 0.37 | 0.49 |
WB39_6D3 | IWA2476 | 6D3 | 6.4 | T/G | Transversion | Synonymous | 0.35 | 0.34 |
WB40_7A | IWA2506 | 7A | 51.2 | T/C | Transition | - | 0.35 | 0.35 |
WB41_7A | IWA4187 | 7A | 145.1 | A/G | Transition | Synonymous | 0.36 | 0.39 |
WB42_7B | IWA1437 | 7B | 19.8 | T/C | Transition | Nonsynonymous | 0.34 | 0.32 |
WB43_7D3 | IWA304 | 7D3 | 8.5 | A/G | Transition | - | 0.37 | 0.5 |
Mean | 0.34 | 0.37 |