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. 2016 Mar 17;11(3):e0150947. doi: 10.1371/journal.pone.0150947

Table 1. Information about the 43-SNP-based molecular barcode and diversity among panel 1 accessions.

SNP barcode SNP ida Chr Position SNP type Type_of_ change_I Type_of_ change_IIb 429 accessionsc
PIC MAF
WB01_1A IWA530 1A 107.3 T/C Transition Synonymous 0.35 0.34
WB02_1A IWA2783 1A 124.5 A/C Transversion Nonsynonymous 0.35 0.35
WB03_1A IWA5405 1A 181.9 T/C Transition Synonymous 0.37 0.44
WB04_1B IWA5186 1B 91.9 A/G Transition Synonymous 0.37 0.47
WB05_1B IWA4153 1B 95.7 T/C Transition Nonsynonymous 0.3 0.25
WB06_1B IWA4154 1B 95.8 T/C Transition Nonsynonymous 0.3 0.25
WB07_1B IWA4155 1B 96.4 T/C Transition Synonymous 0.3 0.25
WB08_1B IWA4031 1B 102.7 A/G Transition Nonsynonymous 0.37 0.43
WB09_1B IWA695 1B 111.2 T/C Transition - 0.37 0.48
WB10_1B IWA4525 1B 133.4 A/G Transition - 0.37 0.48
WB11_1D IWA4884 1D 95.7 T/C Transition Synonymous 0.22 0.15
WB12_2A IWA2938 2A 189.8 A/C Transversion Nonsynonymous 0.37 0.49
WB13_2B IWA2442 2B 47.4 A/C Transversion Nonsynonymous 0.36 0.39
WB14_2B IWA4323 2B 110.8 T/G Transversion Synonymous 0.26 0.19
WB15_2D IWA2961 2D 117.7 A/G Transition Synonymous 0.36 0.39
WB16_3A IWA5285 3A 108.5 T/C Transition Synonymous 0.37 0.5
WB17_3B IWA5106 3B 13.8 A/G Transition Synonymous 0.36 0.39
WB18_3B IWA2037 3B 33.2 T/C Transition - 0.26 0.19
WB19_3B IWA8303 3B 37.2 A/G Transition Synonymous 0.34 0.31
WB20_3B IWA662 3B 52.8 T/C Transition - 0.37 0.47
WB21_3B IWA5618 3B 52.8 T/C Transition Synonymous 0.37 0.45
WB22_3B IWA6279 3B 73.8 A/G Transition Synonymous 0.14 0.08
WB23_3B IWA3710 3B 88.3 A/G Transition - 0.37 0.41
WB24_3B IWA2124 3B 102 A/G Transition - 0.37 0.43
WB25_3B IWA3835 3B 102.6 T/G Transversion Nonsynonymous 0.37 0.41
WB26_3D3 IWA3011 3D3 17.7 T/C Transition - 0.35 0.34
WB27_4A IWA1691 4A 108.4 A/G Transition Nonsynonymous 0.36 0.37
WB28_4B IWA4854 4B 41.4 A/C Transversion Synonymous 0.34 0.31
WB29_4D IWA5375 4D 26.9 T/G Transversion Nonsynonymous 0.35 0.36
WB30_5A IWA4805 5A 60.5 T/G Transversion Synonymous 0.35 0.34
WB31_5A IWA5326 5A 123.1 A/G Transition Nonsynonymous 0.2 0.13
WB32_5B IWA1755 5B 96.5 A/G Transition Nonsynonymous 0.37 0.49
WB33_5B IWA2698 5B 111.6 T/C Transition Nonsynonymous 0.37 0.46
WB34_5B IWA6526 5B 158.6 A/G Transition Synonymous 0.37 0.44
WB35_5D3 IWA7177 5D3cult 18 T/C Transition - 0.37 0.5
WB36_6A IWA224 6A 114.5 T/C Transition - 0.37 0.48
WB37_6B IWA8380 6B 37.2 A/G Transition Synonymous 0.37 0.43
WB38_6B IWA3312 6B 73.7 T/C Transition - 0.37 0.49
WB39_6D3 IWA2476 6D3 6.4 T/G Transversion Synonymous 0.35 0.34
WB40_7A IWA2506 7A 51.2 T/C Transition - 0.35 0.35
WB41_7A IWA4187 7A 145.1 A/G Transition Synonymous 0.36 0.39
WB42_7B IWA1437 7B 19.8 T/C Transition Nonsynonymous 0.34 0.32
WB43_7D3 IWA304 7D3 8.5 A/G Transition - 0.37 0.5
Mean 0.34 0.37

a SNP id, chromosome position (Chr); SNP type, type of change I and II according to [6, 9]

b -, unknown type of change II

c PIC, polymorphism information content; MAF, minor allele frequency