Extended Data Table 1.
Overlap of piRNAs from CLIP and IP libraries Comparisons of piRNA sequences found in CLIP and IP libraries from same tissues.
| a | |||||||
|---|---|---|---|---|---|---|---|
| Library 1 | Library 2 | unique piRNA sequences in library 1 | unique piRNA sequences in library 2 | common | percent1 | percent2 | average percent 2 |
| Aub_IP_yw_embryo_0-2h | Aub_CLIP_yw_embryo_0-2h_H1 | 6913438 | 348812 | 150654 | 2.179147336 | 43.19060124 | 42.22806 |
| Aub_IP_yw_embryo_0-2h | Aub_CLIP_yw_embryo_0-2h_H2 | 6913438 | 838891 | 333876 | 4.829377222 | 39.79968792 | |
| Aub_IP_yw_embryo_0-2h | Aub_CLIP_yw_embryo_0-2h_H3 | 6913438 | 694458 | 284532 | 4.115636822 | 40.97180823 | |
| Aub_IP_yw_ovary | Aub_CLIP_yw_ovary_H1 | 9938639 | 560082 | 286627 | 2.883966306 | 51.17589924 | |
| Aub_IP_yw_ovary | Aub_CLIP_yw_ovary_H3 | 9938639 | 293375 | 156976 | 1.579451673 | 53.50694504 | |
| Aub_IP_yw_ovary | Aub_CLIP_yw_ovary_H2 | 9938639 | 332484 | 176012 | 1.770986953 | 52.93848727 | |
| Aub_IP_tud_embryo_0-2h | Aub_CLIP_tud_embryo_0-2h_L1 | 5147948 | 1257672 | 458182 | 8.900284152 | 36.43096133 | |
| Aub_IP_tud_embryo_0-2h | Aub_CLIP_tud_embryo_0-2h_H2 | 5147948 | 1104187 | 460392 | 8.943213879 | 41.69511143 | |
| Aub_IP_tud_embryo_0-2h | Aub_CLIP_tud_embryo_0-2h_H3 | 5147948 | 2567880 | 948630 | 18.42734231 | 36.94214683 | |
| Aub_IP_tud_embryo_0-2h | Aub_CLIP_tud_embryo_0-2h_H1 | 5147948 | 1040626 | 379030 | 7.362739484 | 36.4232683 | |
| Aub_IP_yw_ovary | Aub_CLIP_yw_ovary_L1 | 9938639 | 1850192 | 874693 | 8.800933407 | 47.27579624 | |
| Aub_IP_yw_ovary | Aub_CLIP_yw_ovary_L2 | 9938639 | 2407082 | 1108175 | 11.15016855 | 46.03810755 | |
| Aub_IP_yw_ovary | Aub_CLIP_yw_ovary_L3 | 9938639 | 3082922 | 1367516 | 13.75959022 | 44.35778784 | |
| Aub_IP_yw_embryo_0-2h | Aub_CLIP_yw_embryo_0-2h_L1 | 6913438 | 2012094 | 722743 | 10.45417634 | 35.91994211 | |
| Aub_IP_yw_embryo_0-2h | Aub_CLIP_yw_embryo_0-2h_L2 | 6913438 | 2161685 | 769241 | 11.12675054 | 35.58524947 | |
| Aub_IP_yw_embryo_0-2h | Aub_CLIP_yw_embryo_0-2h_L3 | 6913438 | 2701578 | 902250 | 13.0506703 | 33.39714789 | |