Table 1. AMD sample information.
Date | Location | pH | Temperature | Type | Platform | Seq. Data | LII Spacers | LII Groups | LIII Spacers | LIII Groups |
---|---|---|---|---|---|---|---|---|---|---|
Mar 2002 | 5way | 0.83 | 42.0 °C | MG PCR | Sanger 454 | 136 MB 52 MB | 389991 | 3516 | 157 | 91 |
Jun 2005 | A Drift (UBA) | 1.1 | 41.0 °C | MG | Sanger | 114 MB | 1871 | 277 | 237 | 187 |
Jul 2005 | A Drift (UBA) | 1.23 | 38.0 °C | PCR | 454 | 13 MB | 59764 | 716 | n/a | n/a |
Nov 2005 | A Drift (UBA) | 1.50 | 38.0 °C | MG | Sanger | 106 MB | 41 | 41 | 48 | 44 |
Jun 2006 | C Drift (C75) | 0.70 | 43.0 °C | MG | 454 | 80 MB | 143 | 75 | 0 | 0 |
Aug 2006 | C Drift (C75) | 1.00 | 43.0 °C | MG | 454 | 88 MB | 79 | 61 | 0 | 0 |
Nov 2006 | C Drift (C75) | 1.18 | 42.7 °C | MG | 454 | 90 MB | 261 | 115 | 8 | 8 |
May 2007 | C Drift (C75) | 1.17 | 44.4 °C | MG | 454 | 96 MB | 304 | 100 | 7 | 7 |
Aug 2007 | C Drift (C75) | 1.12 | 40.2 °C | MG | 454 | 95 MB | 232 | 99 | 0 | 0 |
Abbreviations: AMD, acid mine drainage; n/a, not applicable. Sampling conditions, sequencing information and the number of CRISPR spacers and CRISPR spacer groups recovered from Leptospirillum groups II (LII) and III (LIII) for each AMD biofilm collected for this study. Each line represents a separate sample. ‘Type' refers to the source of the sequencing, either metagenomic dataset (MG) or CRISPR amplicon dataset (PCR). In certain cases, spacers and spacer groups may be shared across multiple samples.