Table 3.
T. rubrum genes modulated on both keratin and elastin substrates
| Gene Id | Expression change (n-fold)a | Tentative annotation | |
|---|---|---|---|
| Keratin vs control | Elastin vs control | ||
| Metabolic Process | |||
| TERG_00072 | −6.70 | −6.73 | Hypothetical protein |
| TERG_00073 | −5.98 | −7.40 | NADPH dehydrogenase |
| TERG_00374 | −6.72 | −5.09 | Metallophosphoesterase domain-containing protein 2 |
| TERG_00881 | −5.18 | −5.39 | Reticulon-4-interacting protein 1 |
| TERG_01338 | −6.84 | −5.30 | Hydantoinase |
| TERG_02078 | −7.57 | −5.84 | Thiamine biosynthesis protein |
| TERG_02132 | −8.95 | −10.39 | 5-Histidylcysteine sulfoxide synthase |
| TERG_02133 | −4.79 | −6.16 | Flug protein |
| TERG_02134 | −10.00 | −10.03 | Indoleamine -dioxygenase-like protein |
| TERG_02197 | −4.85 | −4.49 | Aliphatic nitrilase |
| TERG_02217 | −5.99 | −4.87 | GNAT family protein |
| TERG_02538 | −4.95 | −4.85 | Carboxylesterase family protein |
| TERG_02712 | −44.76 | −43.66 | Glutamyl-tRNA amidotransferase |
| TERG_03707 | −12.95 | −5.49 | Fusicoccadiene synthase |
| TERG_04073 | −4.98 | −6.64 | Glutathione synthetase |
| TERG_06261 | −6.17 | −5.18 | Phosphoric ester hydrolase |
| TERG_07159 | −4.91 | −4.72 | Prenyltransferase alpha subunit |
| TERG_07504 | −5.71 | −6.65 | Carbohydrate-binding protein |
| TERG_07821 | −8.24 | −11.57 | Hypothetical protein |
| TERG_08054 | −6.35 | −7.18 | Homoserine acetyltransferase family protein |
| TERG_08261 | −4.47 | −5.79 | Glutamate decarboxylase |
| TERG_08554 | −4.37 | −6.20 | Riboflavin-specific deaminase |
| TERG_08787 | −7.01 | −5.61 | Aminotransferase family protein |
| TERG_08868 | −5.02 | −4.38 | FKBP-type peptidyl-prolyl |
| TERG_06540 | −4,10 | −7.32 | Glutathione transferase |
| Regulation of Biological Process | |||
| TERG_01762 | −7.45 | −4.30 | Sulfite reductase beta-component |
| TERG_03972 | −4.43 | −5.42 | Elongation factor g |
| TERG_04862 | −11.93 | −7.97 | C6 sexual development transcription factor |
| TERG_05617 | −6.98 | −8.13 | Hypothetical protein |
| TERG_08437 | −8.34 | −6.36 | C2H2 transcription factor |
| TERG_11890 | −8.78 | −6.75 | Hypothetical protein |
| Transporter | |||
| TERG_04308 | −20.09 | −13.39 | MFS sugar transporter |
| TERG_06954 | −10.53 | −4.10 | Hypothetical protein |
| Protease Activity | |||
| TERG_02001 | −17.10 | −14.96 | Dipeptidyl-peptidase 5 |
| TERG_03104 | −7.94 | −10.17 | Signal peptidase i |
| TERG_04324 | +14.97 | +4.77 | Extracellular metalloproteinase 4 |
| TERG_05842 | −4,08 | −5.55 | Peptidase |
| Fatty acid and lipid metabolism | |||
| TERG_02704 | −12.05 | −19.34 | Short-chain dehydrogenase |
| TERG_05484 | +6.56 | +5.30 | Acyl- dehydrogenase |
| TERG_11720 | −4.39 | −4.65 | Acyl- dehydrogenase |
| Cell Wall | |||
| TERG_00060 | −9.15 | −7.25 | Bys1 domain |
| TERG_05625 | −15.77 | −7.94 | Glycoside hydrolase family 18 protein |
| TERG_11657 | −6.60 | −9.36 | Glycoside hydrolase family 18 protein |
| Drug Response | |||
| TERG_05309 | −5.85 | −6.39 | Puromycin resistance protein pur8 |
| Response to stress | |||
| TERG_01122 | +6.72 | +6.75 | Chaperone heat shock protein |
aOnly genes with a fold change of four or higher are indicated. + induction; −repression