Table 1. The number of consensus cattle gene pairs in the NCBI and Ensembl cattle genome databases.
| Number of matched pairs | |||
|---|---|---|---|
| Sequential unique matches | |||
| Type of match | Non-exclusive matches | UMD 3.1 | Btau 3.1 |
| Gene coordinates | 2,467 | 5,295 | 2,109 |
| Gene name | 5,742 | 5,963 | 5,187 |
| Function name | 10,009 | 4,693 | 71 |
| Unigene ID | 11,874 | 1,398 | - |
| Cross-reference gene ID | 16,317 | 1,511 | 8,800 |
| Protein accessions | 16,423 | 262 | - |
| EC numbers | 1,255 | 1 | 6 |
| Manually matched* | 27 | ||
| Total | 64,087 | 19,123 | 16,200 |
*Manually matched after manual evaluation. Those pairs were not matched because the genes were classified with different gene type or strand in the NCBI and Ensembl gene models.