Sheet 1 ('
Figure 7A') includes sample metadata and Shannon's Diversity Index calculated at the species level. Sheet 2 ('
Figure 7B taxa table') includes the taxa count matrix, by sample, that was used to model log
2-fold changes in abundance for
Figure 7B and
Figure 7—figure supplement 1. Sheet 3 ('
Figure 7B model output') shows model output for log
2-fold change in abundance at the genus level across all pre- and post-slaughter samples. Sheet 4 ('
Figure 7 supp. Model output') shows model output for log
2-fold change in abundance at the genus level between pre- and post-slaughter swab samples.