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. 2016 Jan 29;5:e12572. doi: 10.7554/eLife.12572

Table 4. Effects of command neuron ablations on model parameters.

The sign of the change (Δ) caused by the ablation is shown as “+” if the value moved away from 0, “–” if the value moved towards 0. Significance was determined using the likelihood ratio test (Weisstein, Eric W. "Likelihood Ratio." From MathWorld--A Wolfram Web Resource. http://mathworld.wolfram. com/LikelihoodRatio.html), which is based on the reduction in likelihood caused by constraining one of the parameters to have the same value in both the ablated cohort and the corresponding sham cohort. The unconstrained fit thus had 12 free parameters (6 for each of the 2 cohorts being compared), while the constrained fit had 11 free parameters. For example, to test the significance of the change in the mean dwell time in the pause state (dP=(pXdX+pYdY)/(pX+pY)dp=(pxdx+pYdY)/(px+py) caused by ablation of the AVA neuron pair, two cohorts (ablated and sham) were grown and tested under identical conditions. The ln likelihood with 12 free parameters was found to be 894794.075. When dp was constrained to be the same for both cohorts, the ln likelihood for the 11 parameter fit was found to be 894784.676. The test statistic D=2×(894794.075894784.676)=18.798 was assumed to come from a chi-squared distribution with one degree of freedom, which yielded p=1.45×105 (shown in the table as p<104). The constrained fitting process was repeated in turn for each ablation/sham pair for each of the 9 rows shown in the table. All p-values are shown without correction for multiple comparisons. Blue denotes significance at p<0.05. Red denotes significance at p<0.05 after Bonferroni correction for 27 comparisons

  REVERSE FORWARD
  AVE AVD AVA AVB PVC
  Sham Ablate p< Sham Ablate p< Sham Ablate p< Sham Ablate p< Sham Ablate p<
dF (s) 5.455 5.221 0.2 5.158 4.081 10-15 6.730 3.143 10-99 7.289 2.642 10-99 6.058 6.558 + 0.02
dR (s) 3.019 2.436 10-6 2.540 2.367 0.05 2.359 1.243 10-41 2.127 1.681 10-6 2.842 2.396 0.0005
dX (s) 0.548 0.548 1 0.514 0.520 + 0.6 0.480 0.582 + 10-7 0.370 0.437 + 10-6 0.457 0.508 + 0.004
dY (s) 0.229 0.263 + 0.002 0.229 0.241 + 0.07 0.214 0.331 + 10-7 0.197 0.144 10-7 0.220 0.226 + 0.5
dp (s) 0.495 0.496 + 1 0.460 0.468 + 0.5 0.437 0.510 + 10-4 0.331 0.416 + 10-11 0.410 0.457 + 0.003
pF 0.720 0.747 + 0.004 0.723 0.689 0.0005 0.809 0.704 10-24 0.818 0.745 10-15 0.749 0.787 + 0.0002
pR 0.192 0.158 10-4 0.188 0.203 + 0.05 0.122 0.137 + 0.04 0.129 0.120 0.2 0.181 0.139 10-9
pX 0.073 0.078 + 0.07 0.072 0.088 + 10-7 0.058 0.113 + 10-9 0.041 0.125 + 10-99 0.056 0.061 + 0.2
pY 0.014 0.017 + 0.02 0.017 0.020 + 0.005 0.011 0.046 + 10-23 0.012 0.010 0.01 0.014 0.013 0.5