Table 4.
Distribution of tetra, penta, and hexapolymer single sequence repeats (SSRs) in Ampelopsis chloroplast genome.
| SSR type | SSR sequence | SSR size (bp) | Start | End | Location |
|---|---|---|---|---|---|
| Tetra | (AAAT)3 | 12 | 52,799 | 52,810 | trnF-GAA/ndhJ (IGS) |
| Tetra | (AAAT)3 | 12 | 126,739 | 126,750 | ndhA (CDS) |
| Tetra | (AATC)3 | 12 | 127,487 | 127,498 | ndhA (CDS) |
| Tetra | (AGAT)3 | 13 | 31,776 | 31,788 | petN/psbM (IGS) |
| Tetra | (AAAG)3 | 13 | 127,046 | 127,058 | ndhA (CDS) |
| Tetra | (AATC)3 | 14 | 68,471 | 68,484 | petA/psbJ (IGS) |
| Tetra | (AGAT)4 | 17 | 1627 | 1643 | psbA/matK (IGS) |
| Tetra | (AAAT)5 | 22 | 104,318 | 104,339 | rps12/trnV-GAU (IGS) |
| Tetra | (AATT)5 | 23 | 54,955 | 54,977 | ndhC/trnV-UAC (IGS) |
| Tetra | (AAAT)6 | 26 | 146,014 | 146,039 | trnV-GAC/rps12 (IGS) |
| Tetra | (AAAG)7 | 29 | 47,086 | 47,114 | ycf3 (CDS) |
| Penta | (AATAT)3 | 15 | 55,700 | 55,714 | ndhC/trnV-UAC (IGS) |
| Penta | (AAAAT)3 | 15 | 70,508 | 70,522 | psbE/petL (IGS) |
| Penta | (AATAT)5 | 27 | 31,699 | 31,725 | petN/psbM (IGS) |
| 7-nucleotide | (AAAAAAT)3 | 21 | 14,750 | 14,770 | atpF/atpH (IGS) |
| 18-nucleotide | (AATATCGTCACTAGCATC) | 78 | 96,562 | 96,639 | ycf2 (CDS) |
| 18-nucleotide | (AATATCGTCACTAGCATC) | 78 | 153,718 | 153,795 | ycf2 (CDS) |