Table S3.
Primers used for FAIRE- and RNA-quantitative PCR
| Name | Oligo sequence |
| AURKAIP1 forward (positive control) | TATACCCGCAGGTCCAGAATCGTT |
| AURKAIP1 reverse (positive control) | AATAGCTCTAGACGCTTCCGCCTT |
| BC006361 forward (negative control) | TTCTCCAACTTTGGAAGCCCAGGA |
| BC006361 reverse (negative control) | TGTCTCCTTCTAGGCCCTCACAAT |
| P1 forward (EWSR1-FLI1 binding) | AAGGAAGGAAGGGAGGGACACATAC |
| P1 reverse (EWSR1-FLI1 binding) | CCTGTGAGTGTGACAGATTACTTGG |
| P7 forward (EWSR1-FLI1 binding) | GGGTGACAGAGTAAGATCCTGTCAGA |
| P7 reverse (EWSR1-FLI1 binding) | TGGGCGTGGTTCTCATGT |
| Enhancer1 forward | TCCTGACTCACTGCCTGGAGCAT |
| Enhancer1 reverse | GGGATTCCTGGAGTCACGGCA |
| Enhancer2 forward | GGCTCAAGCGCCTGGGTTTTGTA |
| Enhancer2 reverse | CAGCGTGGCTTCCTGGGCTTC |
| Enhancer3 forward | TTGCAAGTGAGTAAGCAGAAGCCCA |
| Enhancer3 reverse | AGCTGACCTCTCCCCTGTGTTAGT |
| Enhancer4 forward | AGTGTGGCGCCGCTCTGGTT |
| Enhancer4 reverse | CGTATTTGGCCACAGGAGGGAGC |
| Enhancer5 forward | ACGGCTGATCGTGTGACTTTCTGC |
| Enhancer5 reverse | GCCTTGACCAACTTGCTGAGGAGT |
| Negative1 forward | GTGGGAAGCTATGGCTGAGAAGCA |
| Negative1 reverse | TTGCCTTGGATTCCGTGCAGC |
| Negative2 forward | ACAGCCGGGGCAACTAGAAGA |
| Negative2 reverse | GACACCGCTTGGACCCGAGG |
| Negative3 forward | CCAGCTTGTCATGGCTACAGGGC |
| Negative3 reverse | GCTCACCGCAGTGACTCAGCAG |
| Negative4 forward | AGGTCAGCGTCAAAGAGGGGCT |
| Negative4 reverse | ACCTGACGCATGAAGGGCAGC |
| Negative5 forward | AGAGCCAAACCCAAGGAGGTAACTA |
| Negative5 reverse | GCCCACATGCATGCAATCCCA |
| Promoter1 forward | CGGGAGGCCAATCGAACGCC |
| Promoter1 reverse | GCTGAACGTCGCTCCTGACCC |
| Promoter2 forward | GCACCTCCCTCTGCCGCTTC |
| Promoter2 reverse | GCCCTCAAAGGGGCGGAACC |
| Promoter3 forward | ACTGCGTCGCTGGCTTGGAG |
| Promoter3 reverse | AAACGCGTGCCCAGCCAATCA |
| Promoter4 forward | GGAACAGATGAGGCAGGCAGGG |
| Promoter4 reverse | TTCTTTCCTCCTCTTTTTGCGGTGG |
| Promoter5 forward | GTGAGAGTGCAGGGCCCCAAG |
| Promoter5 reverse | GCCCGCCTTTCTCGCCGGTA |
| Promoter6 forward | TCACATGACCCGCCCAACCG |
| Promoter6 reverse | CGACGGCGGAAGAGAACGCT |
| Target 3 forward | GCATCAGGAAGCCTGGATCCATTA |
| Target 3 reverse | GTATATACCAACACCCTTCCCTG |
| Target 4 forward | AGATCCGGTTCAAATGGCAAGAGC |
| Target 4 reverse | GCACTCATCCTTAAGCCTCAACCA |
| Control 2 forward | CAAACTTCGGCTCACTTCGGCAAT |
| Control 2 reverse | AAGAAAGCCGAAACATGTCGCTCC |
| EWSR1-FLI1 mRNA forward | GCTATGGTCAACAAAGCAGCTATG |
| EWSR1-FLI1 mRNA reverse | TTGGCTAGGCGACTGCTGGT |
| RPL27 mRNA forward | GACGCAAAGCTGTCATCGTG |
| RPL27 mRNA reverse | GCAGTTTCTGGAAGAACCAC |