Table 2. The differences (D) or similarities (S) between the known viral miRNAs from JS-2012 strain and miRBase.
| miRNA | Sequence(5’-3’) | Length | Strand and Position | Reads |
|---|---|---|---|---|
| prv-miR-LLT1-3p (S) | TCTCACCCCTGGGTCCGTCGC a | 21 | +98550–98570 | 148492 |
| prv-miR-LLT2-5p (D) | CTCATCCCGTCAGACCTGCGCC a | 22 | +99014–99035 | 1141 |
| CTCATCCCGTCAGACCTGCGb | 20 | +99014–99033 | 284 | |
| prv-miR-LLT3-3p (S) | CGCACACGCCCCTCTCGCGCAC a | 22 | +99114–99135 | 987 |
| prv-miR-LLT4-5p (S) | AGAGTATCAGCGTGGCTTTTTT a | 22 | +99394–99415 | 19472 |
| prv-miR-LLT5-3p (D) | ATGAGTGGATGGATGGAGGCGA a | 22 | +100603–100624 | 21596 |
| TGAGTGGATGGATGGAGGCGAGb | 22 | +100604–100625 | 17690 | |
| prv-miR-LLT6-5p (D) | CGTACCGACCCGCCTACCAGGCA a | 23 | +100238–100260 | 7457 |
| CGTACCGACCCGCCTACCAGGb | 21 | +100238–100258 | 64 | |
| prv-miR-LLT7-5p (D) | CCGGGGGGTTGATGGGGATGGG a | 22 | +99979–100000 | 4181 |
| CCGGGGGGTTGATGGGGATb | 19 | +99979–99997 | 41 | |
| prv-miR-LLT8-5p (D) | GTGGGGGCGAAGATTGGGTTGGG a | 23 | +100912–100934 | 12911 |
| GTGGGGGCGAAGATTGGGTTb | 20 | +100912–100931 | 377 | |
| prv-miR-LLT9-5p (D) | TCGAGGAGATGTGGAGGGGTGC a | 22 | +101067–101088 | 23870 |
| ATCGAGGAGATGTGGAGGGGb | 20 | +101066–101085 | 265 | |
| prv-miR-LLT10a/b-3p (S) | CCGAGCCTGCCCCTTCCGTCGCA a | 23 | +102570-102592/-144577-144599 | 1894 |
| prv-miR-LLT11a/b-5p (S) | AGGCTGGGAGTGGGGACGGAAGA a | 23 | +102707-102729/-144440-144462 | 30780 |
a: The most abundant viral miRNAs sequences in this study.
b: The viral miRNAs sequences in this study were the same as the miRBase.