Table 3. Performance comparison at different specificity levels for SHP-1-specific dephosphorylation site prediction.

Specificity level	High			Middle			Low
	SPE	SEN	MCC	SPE	SEN	MCC	SPE	SEN	MCC
kNN-DEPHOS	0.921	0.44	0.277	–	–	–	0.817	0.68	0.279
MGPS-DEPHOS	0.900	0.600	0.343	0.850	0.700	0.327	0.800	0.780	0.315
CKSAAP-DEPHOS	0.900	0.520	0.293	0.850	0.680	0.316	0.800	0.760	0.304

“–” denotes that the performance value was not available at the corresponding specificity level.