Table 6. The predictive performance between different methods for the prediction of dephosphorylation sites of the three phosphatases, PTP1B, SHP-1, and SHP-2.

Method	PTP1B (42, 291)	SHP-1 (41, 301)	SHP-2 (37, 298)
kNN-DEPHOS	0.725	0.765	0.806
GPS-DEPHOS	0.84	0.881	0.881
CKSAAP-DEPHOS	0.894	0.848	0.873

The two numbers in the parentheses indicate the size of the positive and negative data set.