Table 2.
LD extent (r 2 V) in each of four subgroups and four genomic regions. Expected LD threshold was 0.2. WE (wine East), WW (wine West) and TE (table East) are the three subgroups of the association panel
| Study region | Linkage disequilibrium extent | Genetic size of the region (cM)a | |||
|---|---|---|---|---|---|
| WW | WE | TE | wild panel | ||
| chr 8 | 120 Kb (72) | 59 Kb (79) | 31 Kb (56) | 49 Kb (50) | 11 |
| chr 9 | 86 Kb (75) | 71 Kb (73) | 33 Kb (78) | 40 Kb (57) | 15 |
| chr 12 | 25 Kb (59) | 9 Kb (63) | 10 Kb (62) | 31 Kb (46) | 3 |
| chr 17 | 295 Kb (80) | 458 Kb (67) | 210 Kb (79) | 127 Kb (77) | 12 |
aEstimated from the composite map of Doligez et al. [40]
The number of SNPs with MAF ≥ 5 % is given in parentheses