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. 2016 Mar 23;7:302. doi: 10.3389/fpls.2016.00302

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Copyright © 2016 Upadhyaya, Bajaj, Narnoliya, Das, Kumar, Gowda, Sharma, Tyagi and Parida.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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(A) GWAS-based Manhattan plot illustrating significant P-values (measured by CMLM model) associated with seed-protein content (SPC %) using 16376 genome-wide GBS-SNPs in chickpea. The x-axis represents the relative density of SNPs physically mapped on eight chromosomes and scaffolds of kabuli genome. The y-axis denotes the –log₁₀ (P)-value for significant association of seven SNPs with SPC trait. The SNPs revealing significant association with SPC trait at cut-off P-value ≤ 1 × 10^-8 are demarcated with dotted lines. (B) Quantile-quantile plot depicting the comparison between expected and observed –log₁₀ (P)-values at a FDR cut-off < 0.05 to scan the significant genomic SNP loci associated with SPC trait in chickpea.