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. 2016 Mar 23;6:23540. doi: 10.1038/srep23540

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Copyright © 2016, Macmillan Publishers Limited

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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IPP is a common intermediate for numerous isoprenoids and may be generated via the mevalonate (upper-left) or methylerythritol phosphate (upper-right) pathway in rubber trees. The IPP-requiring KEGG pathways that utilize IPP to synthesize different classes of isoprenoids are shown. The isoprenoid end-product KEGG pathways containing the assembled unigenes and DEGs identified in this study are underlined. The IPP-requiring KEGG pathway (monoterpenoid biosynthesis) in which the DEGs were enriched is highlighted in gray. PDC, pyruvate dehydrogenase complex; AACT, acetyl coenzyme A acetyltransferase; HMGS, hydroxymethyglutaryl coenzyme A synthase; HMGR, hydroxymethyglutaryl coenzyme A reductase; MK, mevalonate kinase; PMK, phosphomevalonate hosphomevalonate kinase; MDC, diphosphomevalonate decarboxylase; DXS, 1-deoxy-D-xylulose 5-phosphate synthase; DXR, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MCT, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; MDS, 4-(cytidine 5′-diphospho)-2-Cmethyl-D-erythritol kinase; CMK, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; HDR, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; IPP, isopentenyl diphosphate; FPPS, farnesyl pyrophosphate synthase; GPPS, geranylgeranyl pyrophosphate synthase; CPT, cis-prenyltransferase. Compared with healthy trees, the upward and downward bold arrows indicate upregulated and downregulated of TPD-related genes, respectively, in TPD trees. *The locations of the two TPD-related genes HbREF and HbSRPP were not confirmed, and therefore they are not indicated in the RB pathway.