Table 1.
Cell line | Measure | Loops | Flanks | Distal | Flanks/Loops | Flanks/Distal | Loops/Distal | |||
---|---|---|---|---|---|---|---|---|---|---|
FCa | P-valueb | FC | P-value | FC | P-value | |||||
K562 | Gene Count | 4378 | 4767 | 6466 | ||||||
Median Expression (FPKM)c | 0.853 | 1.698 | 0.091 | 1.99 | 5.89e–07 | 18.66 | 1.25e–93 | 9.37 | 9.74e–56 | |
Median TSId | 0.754 | 0.6756 | 0.7565 | 0.9 | 5.3e–37 | 0.89 | 8.23e–47 | 1.0 | 0.27 | |
Median CVe | 1.142 | 0.8357 | 1.192 | 0.73 | 1.72e–36 | 0.7 | 1.34e–56 | 0.96 | 0.01 | |
MCF7 | Gene Count | 5469 | 6490 | 3847 | ||||||
Median Expression (FPKM) | 0.467 | 2.18 | 0.413 | 4.67 | 1.92e–65 | 5.28 | 1.07e–90 | 1.13 | 9.04e–06 | |
Median TSI | 0.7818 | 0.6721 | 0.7549 | 0.86 | 1.65e–98 | 0.89 | 3.16e–46 | 1.04 | 1.19e–05 | |
Median CV | 1.331 | 0.8214 | 1.178 | 0.62 | 3.92e–100 | 0.7 | 9.91e–56 | 1.13 | 7.65e–04 |
aFC: Fold Change of the medians
b P-value based on Wilcoxon rank sum test with continuity correction
cFPKM: Fragments Per Kilobase per Million mapped reads
dTSI: Tissue Specificity Index
eCV: Coefficient of Variation