Table 1.
Native contact list for DPDP. Contacts obtained from 10 ns of standard MD simulation at 277K.
| Hairpin | Contact | Type | Hairpin | Contact | Type |
|---|---|---|---|---|---|
| 1 | V1-I3 | Sidechain | 2 | T9-Q20 | Sidechain |
| 1 | V1-E12 | Sidechain | 2 | Y10-K17 | Sidechain |
| 1 | F2-T11 | Sidechain | 2 | Y10-L19 | Sidechain |
| 1 | I3-S5 | Sidechain | 2 | T11-V13 | Sidechain |
| 1 | I3-E12 | Sidechain | 2 | T11-I18 | Sidechain |
| 1 | T4-G7 | Sidechain | 2 | T11-Q20 | Sidechain |
| 1 | T4-T9 | Sidechain | 2 | E12-dP14 | Sidechain |
| 1 | S5-Y10 | Sidechain | 2 | E12-G15 | Sidechain |
| 1 | V1H–E12O | Hbond | 2 | E12-K17 | Sidechain |
| 1 | V1O–E12H | Hbond | 2 | V13-I18 | Sidechain |
| 1 | I3H–Y10O | Hbond | 2 | T9O–Q20H | Hbond |
| 1 | I3O–Y10H | Hbond | 2 | T11H–I18O | Hbond |
| 2 | K8-Y10 | Sidechain | 2 | T11O–I18H | Hbond |
| 2 | K8-Q20 | Sidechain | 2 | V13H–K16O | Hbond |