Table 1.
The overview of ChIP-seq peaks and CRMs.
| ChIP-seq peaks for |
no. of CRMs or peaks |
|||||
|---|---|---|---|---|---|---|
| Otx2 | Lim1 | Gsc | p300 | TLE | ||
| overlapped with 5 peaks |
722 | |||||
| overlapped with 4 peaks |
7 | |||||
| 161 | ||||||
| 1,654 | ||||||
| 768 | ||||||
| 1 | ||||||
| overlapped with 3 peaks |
4 | |||||
| 1,004 | ||||||
| 529 | ||||||
| 20 | ||||||
| 1,556 | ||||||
| 3,506 | ||||||
| 0 | ||||||
| 3 | ||||||
| 73 | ||||||
| 94 | ||||||
| overlapped with 2 peaks |
856 | |||||
| 163 | ||||||
| 2,192 | ||||||
| 4,547 | ||||||
| 8 | ||||||
| 213 | ||||||
| 72 | ||||||
| 27 | ||||||
| 659 | ||||||
| 3,026 | ||||||
| single peaks | 8,732 | |||||
| 5,683 | ||||||
| 20,619 | ||||||
| 13,057 | ||||||
| 18,933 | ||||||
| total peaks potential CRMs |
27,095 | 11,245 | 25,002 | 26,939 | 36,403 | 88,889 |
| 17,689 | 5,307 | 4,193 | 13,307 | 17,371 | 21,865 | |
| p300+;TLE+ | 6,650 | 2,450 | 1,585 | 9,844 | 9,844 | 9,844 |
| p300+;TLE- | 3,223 | 1,224 | 54 | 3,463 | - | 3,463 |
| p300-;TLE+ | 6,793 | 765 | 2,379 | - | 7,527 | 7,527 |
| p300-;TLE- | 1,024 | 873 | 175 | - | - | 1,031 |