Table 1.
Metrics of data sets containing variant and invariant sites
| Species | No. indivs. | No. of tag locations |
No. bp | Mean coverage |
Mean dist between RADseq tags (kb) |
No. of SNPsa | Mean (Max) SNPs per tag |
|---|---|---|---|---|---|---|---|
| An. gambiae | 24 | 2033 | 172,655 | 88 | 131 | 6387 (6437) | 3.14 (17) |
| An. arabiensis | 36 | 2049 | 129,315 | 106 | 130 | 5137 (5195) | 2.51 (23) |
| An. merus | 12 | 2280 | 253,043 | 134 | 115 | 4135 (4161) | 1.81 (13) |
aNumber in brackets shows number of SNPs in variant only data sets. Bayesian variant calling resulted in slightly different numbers of SNPs in variant only vs genotype data sets