Table 1.
Overview of the sequencing and assembly
| C | E-8 | E-24 | Total | |
|---|---|---|---|---|
| Total Raw Reads | 55,532,586 | 54,200,296 | 54,549,846 | |
| Total Clean Reads | 53,177,976 | 51,965,770 | 52,303,714 | |
| Total Clean Nucleotides (nt) | 4,786,017,840 | 4,676,919,300 | 4,707,334,260 | |
| Q20 percentage | 98.24 % | 98.30 % | 98.30 % | |
| N percentage | 0.00 % | 0.00 % | 0.00 % | |
| GC percentage | 43.33 % | 43.48 % | 43.31 % | |
| Contig | ||||
| Total Number | 139,806 | 140,407 | 138,182 | |
| Total Length (nt) | 49,459,322 | 49,507,343 | 49,415,302 | |
| Mean Length (nt) | 354 | 353 | 358 | |
| N50 | 667 | 659 | 683 | |
| Unigene | ||||
| Total Number | 80,800 | 81,335 | 80,048 | 84,425 |
| Total Length (nt) | 65,946,686 | 65,357,057 | 65,398,163 | 92,963,404 |
| Mean Length (nt) | 816 | 804 | 817 | 1101 |
| N50 | 1,652 | 1,640 | 1,673 | 1,875 |
| Total Consensus Sequences | 80,800 | 81,335 | 80,048 | 84,425 |
| Distinct Clusters | 30,702 | 29,583 | 30,307 | 40,642 |
| Distinct Singletons | 50,098 | 51,752 | 49,741 | 43,783 |