Table 1. Strains of the reference collection.
Sample Name | Species | Lineage/Genotype | Phylogenetic Group |
---|---|---|---|
1449/02 | M. africanum | West African 1a | Clade 2 |
1473/02 | M. africanum | West African 1a | Clade 2 |
5434/02 | M. africanum | West African 1a | Clade 2 |
10473/01 | M. africanum | West African 1b | Clade 2 |
10494/01 | M. africanum | West African 1b | Clade 2 |
1443/02 | M. africanum | West African 1b | Clade 2 |
10514/01 | M. africanum | West African 2 | Clade 2 |
10517/01 | M. africanum | West African 2 | Clade 2 |
5468/02 | M. africanum | West African 2 | Clade 2 |
9550/00 | M. africanum | West African 2 ATCC 25420 | Clade 2 |
4258/00 | M. bovis | Bovis | Clade 2 |
751/01 | M. bovis | Bovis | Clade 2 |
7540/01 | M. bovis | Bovis | Clade 2 |
9564/00 | M. bovis | Bovis ATCC 19210 | Clade 2 |
3040/99 | M. canettii | Canettii | Clade 2 |
3041/99 | M. canettii | Canettii | Clade 2 |
3151/08 | M. canetti | Canettii | Clade 2 |
1694/00 | M. caprae | Caprae | Clade 2 |
8986/99 | M. caprae | Caprae | Clade 2 |
9577/99 | M. caprae | Caprae | Clade 2 |
416/01 | M. microti | Llama | Clade 2 |
8753/00 | M. microti | Llama | Clade 2 |
1479/99 | M. microti | Vole | Clade 2 |
7011/02 | M. pinipedii | Seal | Clade 2 |
7739/01 | M. pinipedii | Seal | Clade 2 |
12594/02 | M. tuberculosis | Beijing | Clade 1 |
1500/03 | M. tuberculosis | Beijing | Clade 1 |
1934/03 | M. tuberculosis | Beijing | Clade 1 |
3256/02 | M. tuberculosis | Beijing | Clade 1 |
3329/02 | M. tuberculosis | Beijing | Clade 1 |
4445/02 | M. tuberculosis | Beijing | Clade 1 |
1417/02 | M. tuberculosis | Cameroon | Clade 1 |
5390/02 | M. tuberculosis | Cameroon | Clade 1 |
5400/02 | M. tuberculosis | Cameroon | Clade 1 |
2637/02 | M. tuberculosis | Delhi/CAS | Clade 1 |
7936/01 | M. tuberculosis | Delhi/CAS | Clade 1 |
9915/01 | M. tuberculosis | Delhi/CAS | Clade 1 |
1797/03 | M. tuberculosis | EAI | Clade 2 |
4850/03 | M. tuberculosis | EAI | Clade 2 |
947/01 | M. tuberculosis | EAI | Clade 2 |
10469/01 | M. tuberculosis | Ghana | Clade 1 |
10493/01 | M. tuberculosis | Ghana | Clade 1 |
2570/02 | M. tuberculosis | Ghana | Clade 1 |
9679/00 | M. tuberculosis | H37Rv ATCC 27294 | Clade 1 |
2336/02 | M. tuberculosis | Haarlem | Clade 1 |
4130/02 | M. tuberculosis | Haarlem | Clade 1 |
9532/03 | M. tuberculosis | Haarlem | Clade 1 |
7968/03 | M. tuberculosis | LAM | Clade 1 |
8885/03 | M. tuberculosis | LAM | Clade 1 |
946/03 | M. tuberculosis | LAM | Clade 1 |
10459/03 | M. tuberculosis | New-1 | Clade 1 |
12591/02 | M. tuberculosis | New-1 | Clade 1 |
8870/03 | M. tuberculosis | New-1 | Clade 1 |
2151/03 | M. tuberculosis | S-type | Clade 1 |
2318/06 | M. tuberculosis | S-type | Clade 1 |
6411/05 | M. tuberculosis | S-type | Clade 1 |
11313/03 | M. tuberculosis | Tur | Clade 1 |
10264/03 | M. tuberculosis | Tur | Clade 1 |
10529/03 | M. tuberculosis | Tur | Clade 1 |
2169/99 | M. tuberculosis | Uganda I | Clade 1 |
2201/99 | M. tuberculosis | Uganda I | Clade 1 |
2333/99 | M. tuberculosis | Uganda I | Clade 1 |
2176/99 | M. tuberculosis | Uganda II | Clade 1 |
2191/99 | M. tuberculosis | Uganda II | Clade 1 |
2253/99 | M. tuberculosis | Uganda II | Clade 1 |
1657/03 | M. tuberculosis | Ural | Clade 1 |
2679/03 | M. tuberculosis | Ural | Clade 1 |
8431/03 | M. tuberculosis | Ural | Clade 1 |
4412/04 | M. tuberculosis | X-type | Clade 1 |
8431/05 | M. tuberculosis | X-type | Clade 1 |
9953/04 | M. tuberculosis | X-type | Clade 1 |
ATCC: American Type Culture Collection; CAS: Central Asien; EAI: East African Indian; LAM: Latin American Mediterranean; Tur: Turkish