Skip to main content
. 2016 Jan-Mar;39(1):97–110. doi: 10.1590/1678-4685-GMB-2015-0126

Table 2. Population, number of genotyped individuals (Ng), number of polymorphic SNPs (Np), number of SNPs in Hardy-Weinberg equilibrium (Ne), average expected heterozygosity (He), and average absolute values of the LD measures by chromosome and for all SNPs1.

Population Ng Np Ne He D D' r2 D1 D'1 r21
Viçosa 99 87 57 0.3049 0.0491 0.8059 0.1949 0.0401 0.7742 0.1660
Viçosa c1 73 89 44 0.3063 0.0298 0.7455 0.1461 0.0282 0.7624 0.1507
Viçosa c4 112 79 28 0.3739 0.0540 0.9107 0.3190 0.0650 0.9325 0.4008
Viçosa c2 fsf 113 76 24 0.3910 0.0741 0.9712 0.4128 0.0800 0.9842 0.4764
Viçosa S4 112 78 30 0.3833 0.0646 0.8014 0.3362 0.0666 0.7484 0.3552
Beija-Flor c1 107 82 31 0.3750 0.0520 0.8035 0.2593 0.0501 0.8134 0.2552
Beija-Flor c4 38 54 10 0.4300 0.0076 0.8108 0.0176 0.0061 0.7614 0.0207
UFV MP-1 95 66 37 0.2879 0.0268 0.7913 0.2005 0.0275 0.7732 0.1992
UFV MP-2 95 61 31 0.3141 0.0169 0.6975 0.1278 0.0165 0.6765 0.1312
Pop1 100 96 93 0.4869 0.0670 0.3392 0.1311 0.0272 0.1389 0.0296
Pop1 300 96 91 0.4858 0.0647 0.3233 0.1268 0.0195 0.0979 0.0232
Pop2 100 96 94 0.4792 0.0454 0.2450 0.0682 0.0252 0.1373 0.0214
Pop2 300 96 95 0.4774 0.0396 0.2107 0.0614 0.0174 0.0943 0.0140