Table 2. Population, number of genotyped individuals (Ng), number of polymorphic SNPs (Np), number of SNPs in Hardy-Weinberg equilibrium (Ne), average expected heterozygosity (He), and average absolute values of the LD measures by chromosome and for all SNPs1.
Population | Ng | Np | Ne | He | D | D' | r2 | D1 | D'1 | r21 |
---|---|---|---|---|---|---|---|---|---|---|
Viçosa | 99 | 87 | 57 | 0.3049 | 0.0491 | 0.8059 | 0.1949 | 0.0401 | 0.7742 | 0.1660 |
Viçosa c1 | 73 | 89 | 44 | 0.3063 | 0.0298 | 0.7455 | 0.1461 | 0.0282 | 0.7624 | 0.1507 |
Viçosa c4 | 112 | 79 | 28 | 0.3739 | 0.0540 | 0.9107 | 0.3190 | 0.0650 | 0.9325 | 0.4008 |
Viçosa c2 fsf | 113 | 76 | 24 | 0.3910 | 0.0741 | 0.9712 | 0.4128 | 0.0800 | 0.9842 | 0.4764 |
Viçosa S4 | 112 | 78 | 30 | 0.3833 | 0.0646 | 0.8014 | 0.3362 | 0.0666 | 0.7484 | 0.3552 |
Beija-Flor c1 | 107 | 82 | 31 | 0.3750 | 0.0520 | 0.8035 | 0.2593 | 0.0501 | 0.8134 | 0.2552 |
Beija-Flor c4 | 38 | 54 | 10 | 0.4300 | 0.0076 | 0.8108 | 0.0176 | 0.0061 | 0.7614 | 0.0207 |
UFV MP-1 | 95 | 66 | 37 | 0.2879 | 0.0268 | 0.7913 | 0.2005 | 0.0275 | 0.7732 | 0.1992 |
UFV MP-2 | 95 | 61 | 31 | 0.3141 | 0.0169 | 0.6975 | 0.1278 | 0.0165 | 0.6765 | 0.1312 |
Pop1 | 100 | 96 | 93 | 0.4869 | 0.0670 | 0.3392 | 0.1311 | 0.0272 | 0.1389 | 0.0296 |
Pop1 | 300 | 96 | 91 | 0.4858 | 0.0647 | 0.3233 | 0.1268 | 0.0195 | 0.0979 | 0.0232 |
Pop2 | 100 | 96 | 94 | 0.4792 | 0.0454 | 0.2450 | 0.0682 | 0.0252 | 0.1373 | 0.0214 |
Pop2 | 300 | 96 | 95 | 0.4774 | 0.0396 | 0.2107 | 0.0614 | 0.0174 | 0.0943 | 0.0140 |