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. 2015 Nov 9;7(1):729–744. doi: 10.18632/oncotarget.6327

Table 5. Canonical pathway analysis in the 231 DEGs.

Pathway Genes in Gene Set Genes in Overlap Gene Symbol P-value FDR
Steroid biosynthesis 17 4 SQLE, DHCR7, NSDHL, DHCR24 0.00000118 0.000475
DNA replication 36 4 MCM2, MCM5, DNA2, RPA1 0.0000272 0.0031
Lysosome 121 6 GAA, CTSA, TCIRG1, CTSF, LAPTM4A, NAGA 0.000028 0.0031
Endocytosis 183 7 RAB11FIP5, RAB5B, RAB11FIP2, RAB11A, NEDD4, LDLR, HSPA1B 0.0000321 0.0031
Cell cycle 128 6 CDKN2C, MCM2, GADD45A, MCM5, CDC7, YWHAG 0.0000385 0.0031
Glycosaminoglycan biosynthesis - keratan sulfate 15 3 B3GNT1, ST3GAL3, FUT8 0.0000478 0.00321
Lysine degradation 44 4 PLOD1, ACAT2, HADH, EHMT2 0.0000608 0.0035
CDK Regulation of DNA Replication 18 3 MCM2, MCM5, CDT1 0.0000849 0.00428
MAPK signaling pathway 267 7 CHUK, GADD45A, IL1A, RPS6KA1, HSPA1B, DUSP1, JUND 0.000334 0.0149
ECM-receptor interaction 84 4 SDC1, ITGB5, DAG1, COL1A1 0.000743 0.0299