Table 2.
Individual Infection | L3-Sample | Mosquito* | Reads (millions) | %mtGenome | %Nuclear | Average Coverage | Total Sites | Homs | Hets |
---|---|---|---|---|---|---|---|---|---|
Pt17 | L3-17A | Af ss | 35.1 | 13 | 74 | 74.3 | 49987 | 6289 | 15801 |
L3-17B | Af ss | 13.4 | 14 | 72 | 40.8 | 22256 | 2486 | 6534 | |
L3-17C | Af ss | 14.6 | 4 | 79 | 33.5 | 14279 | 1474 | 3996 | |
L3-17D | Af ss | 44.2 | 15 | 73 | 81.8 | 49465 | 6234 | 16366 | |
L3-17E | Af ss | 46.6 | 17 | 72 | 79.6 | 53677 | 6916 | 17542 | |
Pt48 | L3-48A | Af ss | 28.7 | 8 | 63 | 36.1 | 18791 | 2409 | 4435 |
L3-48B | Af ss | 37.1 | 15 | 70 | 60.7 | 48014 | 7412 | 12296 | |
L3-4851 | Ah | 7.0 | 0.7 | 82 | 30.4 | 22652 | 2969 | 5491 | |
L3-4853 | Af ss | 158.4 | 2 | 82 | 136.4 | 72774 | 11902 | 25289 | |
L3-4873 | Ah | 17.0 | 7 | 83 | 64.9 | 60462 | 7625 | 21641 | |
Pt74 | L3-74A | Ap | 39.8 | 0.1 | 29 | 46.6 | 12307 | 1603 | 2985 |
L3-74B | Ap | 33.4 | 3 | 50 | 62.7 | 38039 | 2126 | 19916 | |
L3-74E | Ap | 30.7 | 0.2 | 79 | 56.3 | 29264 | 4377 | 7491 |