TABLE 2.
Prevalence of the 20 most frequently detected P. acnes strains in samples investigated by microbial enrichment, shotgun sequencing, and all samples combined
| Strain | Prevalence (%) in: |
||
|---|---|---|---|
| All samples | Microbial enrichment | Shotgun sequencing | |
| 119_PAVI | 82 | 83 | 64 |
| SK182B-JCVI | 78 | 81 | 60 |
| HL025PA1 | 56 | 62 | 36 |
| JCM 18920 | 45 | 66 | 6 |
| HL050PA2 | 44 | 52 | 23 |
| HL001PA1 | 34 | 51 | 4 |
| HL411PA1 | 32 | 26 | 36 |
| C1 | 31 | 46 | 3 |
| HL110PA4 | 29 | 14 | 46 |
| ATCC 6919 | 27 | 32 | 14 |
| JCM 18909 | 26 | 37 | 4 |
| HL082PA2 | 24 | 35 | |
| J165 | 24 | 22 | 22 |
| HL201PA1 | 20 | 29 | |
| HL110PA1 | 19 | 27 | |
| HL030PA1 | 16 | 21 | |
| SK187 | 15 | 22 | |
| HL099PA1 | 15 | 21 | |
| HL078PA1 | 12 | 18 | |
| J139 | 11 | 15 | 4 |
| HL087PA2 | 15 | ||
| KPA171202 | 14 | ||
| HL056PA1 | 7 | ||
| HL110PA3 | 6 | ||
| HL025PA2 | 4 | ||
| HL046PA2 | 3 | ||
| HL074PA1 | 3 | ||