Table 5.
HPV type and variant classification through phylogenetic analysis and SNP score.
| HPV Type | Bootstrap Value | HPV Intra-Type Variant | Sample IDs | |
|---|---|---|---|---|
| Phylogenetic Analysis | SNP Score | |||
| 16 | 1.00 | A | A | 281, 260, 877, 665, 198, 644, 088 |
| 16 | 1.00 | C | C | 387 |
| 16 | 0.70 | D | A, B, C, D * | 004 |
| 18 | 0.99 | A | A | 507, 631, 665, 8517, 877, 731, 007 |
| 18 | 0.91 | B | B | 385 |
| 31 | 1.00 | B | B | 995, 385, 665, 235 |
| 31 | 1.00 | C | C | 201, 631, 260, 8517 |
| 33 | 1.00 | A | A | 901, 351 |
| 35 | 1.00 | A | -** | 805, 843 |
| 39 | 0.99 | A | A | 260, 787, 860 |
| 45 | 0.90 | A | A | 225 |
| 45 | 0.84 | B | B | 913, 292 |
| 51 | 1.00 | A | A | 096, 933, 772 |
| 52 | 0.75 | A | A | 199, 014, 507, 877, 385 |
| 56 | 0.91 | B | B | 082, 095, 631 |
| 58 | 0.78 | A | A | 206, 6517, 203, 108 |
| 58 | 0.96 | B | B | 890, 099 |
| 59 | 0.95 | B | B | 002, 043, 041 |
| 68 | 1.00 | A, B * | A, B * | 541 |
* Unable to discriminate among indicated lineages. ** The SNP score for HPV35 was not computed since only one variant is known.