TABLE 1.
Primer | Sequence (5′→3′)a | Restriction site | Locationb |
---|---|---|---|
gDfw | CAC AGA ATT CAC CTG CCA GCG CCA TGC | EcoRI | 121132–121148 |
gDrv | CAC AGA ATT CCA TCG ACG CCG GTA CTG C | EcoRI | 122370–121353 |
gBmutΔK883/008R | CCG AAT TCC TAC CCG CTG TTC TTG CGC GC | EcoRI | 16138–16157 |
gBmutE290G F | CGT CGA GGA GGT GGG GGC GCG CTC CG | 17943–17918 | |
gBmutE290G R | CG GAG CGC GCC CCC ACC TCC TCG ACG | 17918–17943 | |
gBmutG672R F | CGC TAC TTT AAG CTG AGG AGC GGG TAC G | 16799–16772 | |
gBmutG672R R | C GTA CCC GCT CCT CAG CTT AAA GTA GCG | 16772–16799 | |
gDmut V25A-fwd | G GAC GCC GTG CCC GCG CCG ACC TTC CCC C | 121164–121173 | |
gDmut V25A-rev | G GGG GAA GGT CGG CGC GGG CAC GGC GTC C | 121173–121164 | |
gDmut A25V-fwd | G GAC GCC GTG CCC GTG CCG ACC TTC CCC C | 121164–121173 | |
gDmut A25V-rev | G GGG GAA GGT CGG CAC GGG CAC GGC GTC C | 121173–121164 | |
gDmut V106A-fwd | GCG GAC GGG TGC GCG CAC CTG CTG TAC | 121247–121255 | |
gDmut V106A-rev | GTA CAG CAG GTG CGC GCA CCC GTC CGC | 121255–121247 | |
gDmut A106V-fwd | GCG GAC GGG TGC GTG CAC CTG CTG TAC | 121247–121255 | |
gDmut A106V-rev | GTA CAG CAG GTG CAC GCA CCC GTC CGC | 121255–121247 |
Nucleotide substitutions are underlined, and added restriction sites are in bold.
Primer sequence locations in the PrV-Ka genome corresponding to accession number JF797218.1 (34) for gB primers or JQ809328.1 (35) for gD and gH primers.