Table 2.
HBV and HCV from the SRP002272 study.
| Run ID | Sample_Source | Reference | Cov (%) | Depth |
|---|---|---|---|---|
| SRR039611 | Human Normal Liver Tissue | NA | NA | NA |
| SRR039612 | Human Normal Liver Tissue | NA | NA | NA |
| SRR039613 | Human Normal Liver Tissue | NA | NA | NA |
| SRR039614 | HBV-Infected Liver Tissue | JQ688405 | 423 (13.2) | 3.0 |
| SRR039615 | Severe Chronic Hepatitis B Liver Tissue | NA | NA | NA |
| SRR039616 | HBV(+) Distal Tissue | NA | NA | NA |
| SRR039617 | HBV(+) Adjacent Tissue | NA | NA | NA |
| SRR039618 | HBV(+) Side Tissue | NA | NA | NA |
| SRR039619∗ | HBV(+) HCC Tissue | NA | NA | NA |
| SRR039620 | HBV(+) Adjacent Tissue | JQ688404 | 1756 (54.6) | 6.0 |
| SRR039621 | HBV(+) HCC Tissue | GQ475344 | 321 (10) | 1.5 |
| SRR039622 | HCV(+) Adjacent Tissue | D85516 | 1032 (10.8) | 1.8 |
| SRR039623 | HCV(+) HCC Tissue | GU133617 | 805 (8.3) | 8.0 |
| SRR039624 | HBV(−) HCV(−) Adjacent Tissue | NA | NA | NA |
| SRR039625 | HBV(−) HCV(−) HCC Tissue | NA | NA | NA |
“Run ID” is uniq for each high-throughput fastq file in the NCBI SRA database. “Reference” uses the NCBI GenBank accession number. “Cov (%)” and “Depth” represent the genome coverage and the average depth, respectively. “Side Tissue” is close to the border between the tumor tissues and the normal tissues but 0–2 cm far from the tumor tissues. “Adjacent Tissue” is the normal tissues 2–5 cm far from the tumor tissues. “Distal Tissue” is the normal tissues at least 10 cm far from the tumor tissues. “SRR039619∗” should have contained HBV but it was not found by our pipeline.