Table 1.
Experimental and computational Mcl-1 and Bcl-xL inhibitory profiles of first generation inhibitors. Experimental data determined by a fluorescence polarization competition assay.
Compound | R1 | R2 | Mcl-1 Ki (μM)a |
Bcl-xL Ki (μM)a |
Selectivity | Mcl-1 LGFE (kcal mol-1) |
Bcl-xL LGFE (kcal mol-1) |
---|---|---|---|---|---|---|---|
3a | 4-Br-C6H4 | H | 2.76 ± 1.26 | 51.4 ± 31.3 | 19 | -39 | -36 |
3b | H | H | 99.0 ± 11.2 | NA | -31 | ||
3c | Bn | H | 56.3 ± 2.1 | NA | -39 | ||
3d | CH2-(2-Cl-C6H4) | H | 50.3 ± 11.8 | - | - | -37 | |
3e | CH2-(3-Cl-C6H4) | H | 5.03 ± 2.78 | - | - | -39 | |
3f | CH2-(4-Cl-C6H4) | H | 21.0 ± 3.9 | 338 ± 203 | 16 | -41 | -39 |
3g | CH2-C6H11 | H | 7.31 ± 1.42 | 77.6 ± 14.3 | 11 | -42 | -41 |
3h | Me | Me | 25.7 ± 4.86 | NA | -36 | ||
3i | -CH2CH2CH2CH2CH2- | 2.95 ± 0.43 | - | -43 | |||
3j | -CH2CH2N(Ph)CH2CH2- | 4.54 ± 3.86 | - | -45 | |||
3k | -CH2CH2N(Bn)CH2CH2- | 3.41 ± 0.37 | - | -34 | |||
3l | Ph | H | 106 ± 26 | NA | -37 | ||
3m | 2-Br-C6H5 | H | 6.84 ± 2.23 | - | -37 | ||
3n | 3-Br-C6H5 | H | 5.64 ± 1.76 | - | -39 | ||
3o | 2,4-di-Br-C6H4 | H | 0.420 ± 0.163 | 2.31 ± 1.35 | 5.5 | -39 | -38 |
3p | 1-Naphthyl | H | 11.2 ± 2.0 | 110 ± 45 | 10 | -40 | -38 |
3q | 2-Naphthyl | H | 4.58 ± 1.56 | 68.5 ± 36.3 | 15 | -39 | -37 |
3r | 2-Ph-C6H4 | H | 8.50 ± 1.34 | - | -43 | ||
3s | 3-Ph-C6H4 | H | 1.88 ± 0.62 | -41 | |||
3t | 4-Ph-C6H4 | H | 1.54 ± 0.46 | - | -44 | ||
3u | 2-CF3-C6H4 | H | 4.05 ± 2.11 | 19.3 ± 9.0 | 4.8 | -42 | -41 |
3v | 4-Cl-C6H4 | H | 1.91 ± 0.26 | - | -40 | ||
3w | 4-CF3-C6H4 | H | 2.50 ± 0.65 | - | -43 | ||
3x | 4-Me-C6H4 | H | 34.3 ± 1.0 | - | -39 | ||
3y | 4-(iPr)-C6H4 | H | 3.86 ± 1.53 | - | -42 | ||
3z | 4-OMe-C6H4 | H | 11.9 ± 2.5 | 71.9 ± 21.0 | 6 | -38 | -36 |
3aa | 4-(OiPr)-C6H4 | H | 54.0 ± 4.6 | NA | -41 | ||
3ab | 4-CN-C6H4 | H | 22.2 ± 1.6 | - | -37 | ||
3ac | 4-NO2-C6H4 | H | 4.49 ± 1.20 | 23.3 ± 2.5 | 5.2 | -39 | -38 |
3ad | 3-CN-C6H4 | H | 26.9 ± 0.6 | -36 |
Ki values determined by Nikolovska-Coleska equation from IC50 values.50 Data represent the average of at least two independent assays; errors are standard deviations.
Selectivity is defined as the Ki (Bcl-xL) divided by the Ki (Mcl-1). NA, no activity.