Table A1.1.

Number of putative SNPs detected by different numbers of SNP calling tools. A threshold mean number of callers ≥3 was used, which was elevated to ≥4 at soft-masked regions.

DOI: http://dx.doi.org/10.7554/eLife.12613.019

#SNP callers	Count	Cumulative count	Freq	Cumulative Freq
1	32,072	32,072	0.822	0.822
1.4	154	34,475	0.004	0.884
1.5	498	34,973	0.013	0.896
2	965	36,160	0.025	0.927
2.5	38	36,244	0.001	0.929
3	476	36,757	0.012	0.942
3.5	114	36,935	0.003	0.947
4	1,019	38,046	0.026	0.975
4.5	179	38,347	0.005	0.983
5	438	39,015	0.011	1