Table 1.
General features of the genomes used in the comparative analysis performed in this study.
| Strain | Size (bp) | GC [%] | Fragmentsb | Gene number | Protein-coding genes | % Core-genomea | Completenessc(%) | GenBank Id |
|---|---|---|---|---|---|---|---|---|
| AD13 | 6001312 | 50.64 | 36 | 5534 | 5468 | 57.9 | 99.7 | LMCC00000000 |
| AD14 | 6201736 | 50.02 | 57 | 5770 | 5679 | 55.7 | 99.7 | LMCD00000000 |
| AD2 | 5126200 | 50.3 | 162 | 4693 | 4634 | 68.3 | 98.7 | LMCB00000000 |
| AD26 | 6181400 | 45.17 | 159 | 5743 | 5680 | 55.7 | 99.4 | LMCE00000000 |
| AD37 | 5875058 | 50.0 | 224 | 5503 | 5445 | 58.1 | 99.4 | LMCF00000000 |
| AD46 | 6124061 | 49.79 | 85 | 5567 | 5502 | 57.5 | 98.7 | LMCG00000000 |
| AD5 | 6061014 | 49.87 | 66 | 5597 | 5497 | 57.6 | 99.4 | LMCH00000000 |
| FO-BEG1 | 5916782 | 52.5 | 2 | 5424 (5042; 382) | 5309 (4927; 382) | 59.6 | 99.7 | PRJNA73563 |
| JE062 | 5717078 | 52.15 | 53 | 5239 | 5096 | 62.1 | 99.0 | PRJNA32093 |
| W64 (AD8) | 5935921 | 50.13 | 49 | 5458 | 5402 | 58.6 | 99.7 | LMCI00000000 |
| W74 (AD15) | 6190724 | 50.59 | 64 | 5741 | 5686 | 55.6 | 99.6 | LMCJ00000000 |
| WM33 (AD30) | 5745729 | 51.02 | 159 | 5394 | 5344 | 59.2 | 99.4 | LMCK00000000 |
For the complete genome of FO-BEG1 the number of genes and protein-coding genes present in the chromosome and in the plasmid are reported in brackets.
a
Proportion of protein-coding genes belonging to the consensus core-genome.
b
Number of contigs or scaffolds.
c
Completeness estimated considering single copy marker genes characteristic for the family Rhodobacteraceae.