Table 1.

Inbreeding coefficient estimates, linkage disequilibrium and correlations of linkage phase for Landrace and Large White populations

	Landrace	Large White
F x	0.014 (0.0003)	0.021 (0.0003)
F ROH	0.094 (0.0006)	0.106 (0.0007)
F SNP	0.668 (0.0005)	0.667 (0.0512)
r 2	0.459 (0.002)	0.497 (0.002)
r	0.770

Numbers presented are the average and its standard error; F _x = pedigree-based inbreeding coefficient; F _ROH = genomic inbreeding based on runs of homozygosity (ROH); F _SNP = genomic inbreeding based on the proportion of SNPs that are homozygous (SNP-by-SNP); r ² = linkage disequilibrium among adjacent SNPs; r = correlations of linkage phase