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. 2016 Feb 9;113(12):E1673–E1682. doi: 10.1073/pnas.1519650113

List of primers and probes used for transcript analysis

Primer name Primer sequence
Hprt fw 5′-GGCCAGACTTTGTTGGATTTG-3′
Hprt rev 5′-TGCGCTCATCTTAGGCTTTGT-3′
Tbp fw 5′-CCCTATCACTCCTGCCACACCAGC-3′
Tbp rev 5′-GTGCAATGGTCTTTAGGTCAAGTTTACAGCC-3′
Gapdh fw 5′-AGGTCGGTGTGAACGGATTTG-3′
Gapdh rev 5′-TGTAGACCATGTAGTTGAGGTCA-3′
Actin fw 5′-GGCTGTATTCCCCTCCATCG-3′
Actin rev 5′-CCAGTTGGTAACAATGCCATGT-3′
Rplp0 fw 5′-AGATTCGGGATATGCTGTTGGC-3′
Rplp0 rev 5′-TCGGGTCCTAGACCAGTGTTC-3′
Cpt1 fw 5′-CTCCGCCTGAGCCATGAAG-3′
Cpt1 rev 5′-CACCAGTGATGATGCCATTCT-3′
Pdh E1β fw 5′-AGGAGGGAATTGAATGTGAGGT-3′
Pdh E1β rev 5′-ACTGGCTTCTATGGCTTCGAT-3′
Pdhx fw 5′-GCTTCACTGTAACCAGCCG-3′
Pdhx rev 5′-CCCTTGCTCCATCGTAGGAGA-3′
Pdh E2 fw 5′-GACCAGCTTAAAGCCACAGG-3′
Pdh E2 rev 5′-AGAGGACTAACGAACACCCTT-3′
Mtnd2 fw 5′-ATACTAGCAATTACTTCTATTTTCATAGGG-3′
Mtnd2 rev 5′-GAGGGATGGGTTGTAAGGAAG-3′
Mtnd5 fw 5′-ACGAAAATGACCCAGACCTC-3′
Mtnd5 rev 5′-GAGATGACAAATCCTGCAAAGATG-3′
Bmal1 fw 5′-CCAAGAAAGTATGGACACAGACAAA-3′
Bmal1 rev 5′-GCATTCTTGATCCTTCCTTGGT-3′
Bmal1 probe FAM-TGACCCTCATGGAAGGTTAGAATATGCAGAA-TAMRA
Per2 rev 5′-ATGCTCGCCATCCACAAGA-3′
Per2 fw 5′-GCGGAATCGAATGGGAGAAT-3′
Per2 probe FAM-ATCCTACAGGCCGGTGGACAGCC-TAMRA