Table II. Pearson correlations between peptides for each HDL protein.

Protein	Peptide 1	Peptide 2	r
ALB	FQNALLVR	LVAASQAALGL	0.90
APOA1	DYVSQFEGSALGK	VQPYLDDFQK	0.79
APOA2	EPCVESLVSQYFQTVTDYGK	EQLTPLIK	0.75
APOA4	IDQNVEELK	LGEVNTYAGDLQK	0.97
APOB	SVSLPSLDPASAK	ITENDIQIALDDAK	0.91
APOC1	TPDVSSALDK	EFGNTLEDK	0.76
APOC2	TYLPAVDEK	ESLSSYWESAK	0.80
APOC3	DALSSVQESQVAQQAR	DYWSTVK	0.78
APOC4	ELLETVVNR	DGWQWFWSPSTFR	0.86
APOD	NPNLPPETVDSLK	VLNQELR	0.86
APOE	SELEEQLTPVAEETR	LEEQAQQIR	0.83
APOF	SLPTEDCENEK	SGVQQLIQYYQDQK	0.68
APOH	TCPKPDDLPFSTVVPLK	TFYEPGEEITYSCKPGYVSR	0.92
APOL1	VTEPISAESGEQVER	ALADGVQK	0.90
APOM	SLTSCLDSK	DGLCVPR	0.79
B2M	VNHVTLSQPK	VEHSDLSFSK	0.89
C3	TGLQEVEVK	TIYTPGSTVLYR	0.95
CLU	LFDSDPITVTVPVEVSR	ASSIIDELFQDR	0.89
GC	HQPQEFPTYVEPTNDEICEAFR	THLPEVFLSK	0.91
GPLD1	NQVVIAAGR	SWITPCPEEK	0.90
HBB	VNVDEVGGEALGR	LLVVYPWTQR	0.99
HPX	EVGTPHGIILDSVDAAFICPGSSR	LLQDEFPGIPSPLDAAVECHR	0.82
HP/HPR	ILGGHLDAK	LPECEAVCGKPK	0.99
HP	DYAEVGR	VTSIQDWVQK	0.79
IHH	ATFASHVQPGQYVLVAGVPGLQPAR	AFQVIETQDPPR	0.87
LBP	SFRPFVPR	VQLYDLGLQIHK	0.97
LCAT	TYIYDHGFPYTDPVGVLYEDGDDTVATR	LEPGQQEEYYR	0.81
LPA	TPAYYPNAGLIK	GTLSTTITGR	0.82
PCYOX1	IFSQETLTK	LVCSGLLQASK	0.81
PLTP	AVEPQLQEEER	FLEQELETITIPDLR	0.92
PON1	STVELFK	SFNPNSPGK	0.94
PON3	LLNYNPEDPPGSEVLR	SVNDIVVLGPEQFYATR	0.83
PPBP	ICLDPDAPR	NIQSLEVIGK	0.89
SAA1/2	DPNHFRPAGLPEKY	SFFSFLGEAFDGAR	0.99
SAA1	FFGHGAEDSLADQAANEWGR	-	-
SAA2	GPGGAWAAEVISNAR	-	-
SAA4	GPGGVWAAK	FRPDGLPK	0.85
SERPINA1	AVLTIDEK	SASLHLPK	0.99
VTN	FEDGVLDPDYPR	GQYCYELDEK	0.91

Proteins were identified on the basis of their gene names.