. 2016 Mar 30;11(3):e0150464. doi: 10.1371/journal.pone.0150464

Table 1. Autosomal SNPs that had a p-value below 10⁻⁴ after logistic regression using the first 3 principal components.

SNP	CHR	BP	n	OR	β	P	major/minor	Freq_Cases	Freq_Controls	Gene
rs1230345	6	112382313	977	1.639	4.668	3.05E-06	C/A	0.330	0.237	WISP3
rs9311525	3	54183550	976	0.663	-4.411	1.03E-05	G/A	0.372	0.470	CACNA2D3
rs1558557	7	8308993	977	0.688	-4.103	4.08E-05	G/A	0.394	0.489
rs838759	10	22498468	977	0.654	-3.929	8.54E-05	G/A	0.217	0.293
rs2512276	11	124115370	975	0.692	-3.918	8.92E-05	C/G	0.406	0.494
rs2106261	16	73051620	977	0.616	-3.912	9.15E-05	G/A	0.140	0.206	ZFHX3
rs4669131	2	7232478	977	0.697	-3.902	9.56E-05	A/G	0.374	0.464
rs231983	3	172236440	977	0.689	-3.900	9.63E-05	A/C	0.334	0.421
rs6825176	4	150990695	977	0.696	-3.896	9.77E-05	A/G	0.443	0.531

Table 1. Autosomal SNPs that had a p-value below 10−4 after logistic regression using the first 3 principal components.