Table 2. Replication of previously reported autosomal SNPs associated with schizophrenia in GWAS studies.[9–22].

p-values were obtained using logistic regression with the first 3 principal components as covariates.

SNP	CHR	BP	n	OR	β	p	major/minor	FreqCases	FreqControls	Gene
rs4846033	1	11788564	977	1.058	0.121	0.904	G/A	0.010	0.009
rs1625579	1	98502934	976	0.870	-1.162	0.245	A/C	0.164	0.184	MIR137
rs10911902	1	186632317	977	0.952	-0.424	0.672	G/A	0.183	0.191
rs2312147	2	58222928	977	0.828	-2.037	0.042	G/A	0.361	0.407	VRK2
rs1344706	2	185778428	976	0.924	-0.859	0.391	A/C	0.410	0.429	ZNF804A
rs17662626	2	193984621	974	0.910	-0.571	0.568	A/G	0.086	0.094
rs10520163	4	170626552	977	1.023	0.253	0.801	A/G	0.501	0.496	CLCN3
rs13194053	6	27143883	977	0.988	-0.092	0.927	A/G	0.165	0.174
rs6932590	6	27248931	976	1.116	1.019	0.308	A/G	0.269	0.257
rs928824	6	30224889	977	1.060	0.329	0.742	G/A	0.074	0.068	HCG17
rs2071286	6	32179896	977	0.780	-2.100	0.036	G/A	0.237	0.267	NOTCH4
rs10503253	8	4180844	977	0.843	-1.514	0.130	C/A	0.192	0.219	CSMD1
rs1155204	8	13334842	977	0.994	-0.037	0.970	A/G	0.089	0.091	DLC1
rs7004633	8	89760311	976	1.143	1.137	0.255	A/G	0.190	0.171
rs7914558	10	104775908	976	0.803	-2.410	0.016	G/A	0.387	0.440	CNNM2
rs11191580	10	104906211	977	0.833	-1.069	0.285	A/G	0.075	0.087	NT5C2
rs1602565	11	29162136	977	1.355	2.155	0.031	A/G	0.137	0.105
rs12807809	11	124606285	977	0.771	-2.144	0.032	A/G	0.156	0.193
rs548181	11	125461709	977	0.848	-1.145	0.252	G/A	0.096	0.114	STT3A
rs1006737	12	2345295	977	1.123	1.194	0.232	G/A	0.333	0.307	CACNA1C
rs11064768	12	119818509	977	0.770	-1.726	0.084	A/G	0.088	0.111	CCDC60
rs7336332	13	28058404	977	0.975	-0.206	0.837	A/G	0.150	0.156
rs915071	14	32433858	977	0.960	-0.453	0.651	A/G	0.486	0.496
rs8042374	15	78908032	977	0.914	-0.821	0.412	A/G	0.222	0.238	CHRNA3
rs7192086	16	13061611	975	1.106	0.927	0.354	T/A	0.256	0.237	SHISA9
rs12966547	18	52752017	977	1.038	0.397	0.692	G/A	0.403	0.395
rs17512836	18	53194961	977	1.041	0.158	0.875	A/G	0.034	0.033	TCF4