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. 2016 Mar 31;7:426. doi: 10.3389/fmicb.2016.00426

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Copyright © 2016 Derakhshani, De Buck, Mortier, Barkema, Krause and Khafipour.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenetic comparisons of ileal mucosa-associated (MAM) and fecal microbiota in control and MAP-infected animals. LEfSe was used to determine differentially abundant genera in (A) fecal microbiota, and (B) ileal MAM of MAP-infected and control animals. Color code represents the class of treatment (red indicates variables that were significantly enriched in response to MAP infection, whereas green indicates variables that were significantly enriched in the control group).