Table 1.
Relative abundances of abundant (>1% of community) bacterial phyla and genera in control and MAP-infected samples.
| Phylum | Genus | Proportion (%) ± SDa | |
|---|---|---|---|
| Control | MAP-positive | ||
| FECAL MICROBIOTA | |||
| Bacteroidetes | 11.10 ± 5.20 | 16.81 ± 6.11 | |
| Uncl. Bacteroidales | 1.38 ± 0.94 | 4.89 ± 3.84 | |
| Uncl. Bacteroidaceae | 0.76 ± 0.61 | 3.40 ± 4.23 | |
| Uncl. Rikenellaceae | 3.49 ± 3.72 | 1.63 ± 1.43 | |
| Uncl. S24-7 | 0.92 ± 1.06 | 1.67 ± 1.25 | |
| 5-7N15 | 3.45 ± 2.04 | 3.31 ± 1.79 | |
| Firmicutes | 80.25 ± 3.27 | 78.03 ± 6.19 | |
| Clostridium | 1.96 ± 0.63 | 2.04 ± 0.42 | |
| Uncl. Clostridiaceae | 9.38 ± 4.52 | 6.96 ± 3.11 | |
| Uncl. Clostridiales | 15.93 ± 3.24 | 14.53 ± 2.70 | |
| Dorea | 1.69 ± 2.30 | 0.96 ± 0.45 | |
| Uncl. Lachnospiraceae | 2.33 ± 1.17 | 2.41 ± 0.93 | |
| Uncl. Mogibacteriaceae | 1.26 ± 0.67 | 1.12 ± 0.34 | |
| Uncl. Peptostreptococcaceae | 10.86 ± 6.77 | 8.26 ± 4.04 | |
| Ruminococcus | 1.41 ± 0.84 | 1.33 ± 0.64 | |
| Uncl. Ruminococcaceae | 27.71 ± 7.38 | 32.93 ± 7.46 | |
| SMB53 | 1.11 ± 0.43 | 0.87 ± 0.37 | |
| Turicibacter | 1.40 ± 1.19 | 1.86 ± 1.17 | |
| Proteobacteria | 1.79 ± 3.74 | 0.34 ± 0.40 | |
| Sphingomonas | 1.63 ± 3.64 | 0 | |
| Tenericutes | 1.98 ± 1.02 | 2.99 ± 1.01 | |
| Uncl. RF39 | 1.82 ± 0.97 | 2.68 ± 1.02 | |
| Verrucomicrobia | 3.56 ± 4.04 | 0.57 ± 0.71 | |
| Akkermansia | 3.55 ± 4.05 | 0.57 ± 0.71 | |
| ILEAL MUCOSA-ASSOCIATED MICROBIOTA | |||
| Actinobacteria | 2.27 ± 0.81 | 3.38 ± 4.85 | |
| Bifidobacterium | 0.85 ± 0.84 | 1.00 ± 0.95 | |
| Bacteroidetes | 16.73 ± 8.51 | 14.55 ± 736 | |
| Bacteroides | 3.51 ± 1.81 | 3.07 ± 1.60 | |
| Uncl. Bacteroidales | 3.96 ± 2.23 | 3.05 ± 1.84 | |
| Porphyromonadaceae | 2.00 ± 1.06 | 1.50 ± 0.95 | |
| Prevotella | 3.82 ± 2.31 | 3.61 ± 2.15 | |
| Uncl. S24-7 | 1.26 ± 0.71 | 1.15 ± 0.78 | |
| Chloroflexi | 1.48 ± 0.94 | 0.79 ± 0.52 | |
| Cyanobacteria | 1.67 ± 2.60 | 0.70 ± 0.85 | |
| Uncl. Streptophyta | 1.13 ± 2.53 | 0.14 ± 0.60 | |
| Firmicutes | 56.33 ± 12.34 | 64.96 ± 14.16 | |
| Allobaculum | 1.44 ± 0.76 | 1.09 ± 0.67 | |
| Blautia | 2.97 ± 2.40 | 1.98 ± 1.11 | |
| Butyrivibrio | 1.46 ± 1.13 | 1.10 ± 0.78 | |
| Clostridium | 2.30 ± 1.19 | 2.91 ± 3.27 | |
| Uncl. Clostridiales | 6.57 ± 1.02 | 9.46 ± 4.27 | |
| Uncl. Clostridiaceae | 8.30 ± 7.91 | 9.76 ± 6.01 | |
| Coprococcus | 2.27 ± 1.49 | 1.49 ± 0.98 | |
| Epulopiscium | 5.67 ± 1.28 | 3.27 ± 1.82 | |
| Lactobacillus | 1.74 ± 0.85 | 0.82 ± 0.45 | |
| Uncl. Lachnospiraceae | 2.28 ± 1.19 | 1.92 ± 1.08 | |
| Uncl. Peptostreptococcaceae | 8.76 ± 9.81 | 13.99 ± 9.90 | |
| Uncl. Ruminococcaceae | 3.49 ± 1.13 | 4.76 ± 3.16 | |
| Ruminococcus | 2.67 ± 1.32 | 2.52 ± 1.01 | |
| Turicibacter | 1.26 ± 1.87 | 2.44 ± 2.33 | |
| Proteobacteria | 17.10 ± 3.59 | 10.41 ± 5.63 | |
| Campylobacter | 1.17 ± 0.77 | 0.68 ± 0.52 | |
| Uncl. Helicobacteraceae | 1.99 ± 1.26 | 1.29 ± 1.09 | |
| Pseudomonas | 4.30 ± 2.41 | 3.20 ± 2.09 | |
| Uncl. Xanthomonadaceae | 1.03 ± 0.53 | 0.57 ± 0.38 | |
| Tenericutes | 0.79 ± 0.45 | 2.46 ± 2.10 | |
| Uncl. RF39 | 0.69 ± 0.45 | 2.30 ± 2.10 | |
a
SD: Standard deviation of the mean.