Table 1. Sequenced Strains.

Strain Name	Alternate Names	Mating Locus	Source	Reference	Mean Coverage	Total Nonduplicate Reads	Read Length
CC-503	reference strain	mt+	Chlamydomonas Resource Center 2012	Merchant et al. (2007)	140	199,339,380	100+100
CC-2290	S1 D2	mt–	Chlamydomonas Resource Center 2011	Gross et al. (1988)	50	180,632,350	50+50
CC-124	137c mt–	mt–	Chlamydomonas Resource Center 2012		73	187,721,897	100+100
CC-125	137c mt+	mt+	Chlamydomonas Resource Center 2012		113	277,120,089	100+100
21gr		mt+	Merchant group prior to 2011		41	114,184,946	50+50
CC-1690	21gr	mt+	Chlamydomonas Resource Center 2011		43	122,314,084	50+50
CC-1691	6145c	mt–	Chlamydomonas Resource Center 2013		71	95,422,478	100+100
CC-1009	UTEX 89	mt–	Chlamydomonas Resource Center 2012		54	76,043,571	100+100
CC-1010	UTEX 90	mt+	Chlamydomonas Resource Center 2012		63	89,383,819	100+100
CC-425		mt+	Merchant group prior to 2011		9	15,044,693	100+100
CC-620	R3+	mt+	Chlamydomonas Resource Center 2013		57	76,312,279	100+100
CC-621	NO–	mt–	Chlamydomonas Resource Center 2013		64	95,483,751	100+100
CC-4286a	1A mt–	mt–	Chlamydomonas Resource Center 2011		16	20,123,761	100+100
CC-4287a	3D mt+	mt+	Chlamydomonas Resource Center 2011		54	147,761,285	50+50
CC-4402b	isoloP	mt+	Chlamydomonas Resource Center 2011		77	206,121,659	50+50
CC-4403b	isoloM	mt–	Chlamydomonas Resource Center 2011		41	112,179,184	50+50
2137A+	2137	mt+	Robert Spreitzer 2012	Spreitzer and Mets (1981)	9	15,321,881	100+100
CC-1021	2137	mt+	Merchant group prior to 2011	Spreitzer and Mets (1981)	6	10,288,676	100+100
CC-3269	2137	mt+	Merchant group prior to 2011	Spreitzer and Mets (1981)	78	99,477,102	100+100
CC-4532		mt–	Laurens Mets 1981		261	414,042,238	76+76
IAM C-9	NIES-2235	mt–	Hideya Fukuzawa 2012		93	120,110,144	100+100
CC-4425	D66+	mt+	Arthur Grossman 2010	Schnell and Lefebvre (1993)	35	87,936,394	50+50
SAG 73.72	C-8	mt+	Maria Mittag 2012		68	99,517,895	100+100
CC-4051	4A+	mt+	Krishna Niyogi prior to 2011	Soupene et al. (2004)	53	138,309,332	50+50
CC-4603c	4Ax5.2–	mt–	Krishna Niyogi 2012	Dent et al. (2005)	17	27,416,092	100+100
CJU10–		mt–	James Umen 2012		67	99,485,786	100+100
g1		mt+	George Witman 2012		97	123,203,137	100+100
S24–		mt–	Francis-Andre Wollman 2012		94	123,642,884	100+100
T222+		mt–	Francis-Andre Wollman 2012		75	101,789,719	100+100
cw15 arg–		mt+	Ralph Bock 2012	Neupert et al. (2009)	73	89,944,895	100+100
302	cw15	mt+	Peter Hegemann 2012		47	57,800,731	100+100
CC-4350	302	mt+	Chlamydomonas Resource Center 2012		67	84,406,501	100+100
CC-4351	325	mt+	Chlamydomonas Resource Center 2012		52	73,762,721	100+100
CC-4568	330 or cw15	mt+	David Dauvillée 2012	Dauvillée et al. (2001)	10	20,811,685	100+100
CC-4348	BAFJ5 or sta6	mt+	Ursula Goodenough 2012	Zabawinski et al. (2001)	51	134,558,203	50+50
CC-4349	Goodenough cw15	mt–	Ursula Goodenough 2012		84	110,405,526	100+100
CC-4567	STA6-C6	mt+	Ursula Goodenough 2012		11	15,536,158	100+100
CC-4504	nrr1-1	mt+	Arthur Grossman 2010	Gonzalez-Ballester et al. (2011)	12	15,549,216	100+100
pcc1-1		mt+	Arthur Grossman 2010	Gonzalez-Ballester et al. (2011)	31	44,027,724	100+100
crd2-1		mt–	Merchant group 2004	Eriksson et al. (2004)	12	22,968,931	76+76

^aCC-4286 and CC-4287 are the result of 10 backcrosses to an unknown strain.

^bCC-4402 and CC-4403 are the result of 10 backcrosses to CC-124.

^cCC-4603 is the result of five backcrosses to CC-4051.